View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9345_low_4 (Length: 361)
Name: NF9345_low_4
Description: NF9345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9345_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 695618 - 695961
Alignment:
| Q |
1 |
tactgaaataaaataaaa-aatgacgtgtttagtttgtttaattttgtactgtatagtgaaggtaatgacatttgaacttaggacctcatcattagacca |
99 |
Q |
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| T |
695618 |
tactgaaataaaaaaaaaaaatgacgtgtttagtttgtttaattttgtactgtatagtgaaggtaatgacatttgaacttaggacctcatcattagacca |
695717 |
T |
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| Q |
100 |
atcttagtgtcttaaatgatgttttttgtggttggtgtttgttatttcacagataatgttaatgtcaacaccaaagaggaagtgattacaaaaattaaaa |
199 |
Q |
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| T |
695718 |
atcttagtgtcttaaatgacgttttttgtgattggtgtttgttatttcacagataatgttaatgtcaacaccaaagaggaagtgattacaaaaattaaaa |
695817 |
T |
|
| Q |
200 |
gcatggaaaactcagcaacttctgtcctatgtagtctgtctgcacacgaaaagcaacagaatcacttcttggaagatataattggggtcgttgccctcct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
695818 |
gcatggaaaactcagcaacttctgtcctatgtagtctgtctgcacacgaaaagcaacagaatcatttcttggaagatataattggggtcgttgccctcct |
695917 |
T |
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| Q |
300 |
tggttctgttaagagtcctgagcttagcaggtttgtcaagtgtt |
343 |
Q |
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| T |
695918 |
tggttctgttaagagtcctaagcttagcaggtttgtcaagtgtt |
695961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 168 - 340
Target Start/End: Original strand, 663564 - 663736
Alignment:
| Q |
168 |
caccaaagaggaagtgattacaaaaattaaaagcatggaaaactcagcaacttctgtcctatgtagtctgtctgcacacgaaaagcaacagaatcacttc |
267 |
Q |
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||||||||| ||| ||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
663564 |
caccaaagaagaaatgactacaaaaattaaaaacatggaaaactcagcagcttctgtcctatgtagtctctctgcacgtgaaaagcaacagaatcacttc |
663663 |
T |
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| Q |
268 |
ttggaagatataattggggtcgttgccctccttggttctgttaagagtcctgagcttagcaggtttgtcaagt |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
663664 |
ttggaagatataattggggtcgttgccctccttggttctgttcagagtcctgagcttagcaggtttgtcaagt |
663736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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