View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9345_low_6 (Length: 350)

Name: NF9345_low_6
Description: NF9345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9345_low_6
NF9345_low_6
[»] chr5 (12 HSPs)
chr5 (1-333)||(37195813-37196145)
chr5 (224-322)||(37226985-37227083)
chr5 (224-304)||(37207539-37207619)
chr5 (33-83)||(37440376-37440426)
chr5 (30-83)||(37221318-37221371)
chr5 (30-83)||(37226791-37226844)
chr5 (224-302)||(37221512-37221590)
chr5 (224-320)||(37201011-37201107)
chr5 (224-320)||(37386871-37386967)
chr5 (32-83)||(37387090-37387141)
chr5 (224-296)||(37309115-37309187)
chr5 (224-311)||(37440556-37440643)
[»] chr3 (1 HSPs)
chr3 (190-252)||(36193096-36193158)
[»] chr2 (1 HSPs)
chr2 (226-285)||(8739507-8739566)


Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 37195813 - 37196145
Alignment:
Q  1 ataacaaacaaagattttgtccaatcttttacaagagtgaatgttccattcccttgtgattgcatccatgatgagtttcttggccatatatttcaatacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37195813 ataacaaacaaagattttgtccaatcttttacaagagtgaatgttccattcccttgtgattgcatccatgatgagtttcttggccatatatttcaatacc 37195912  T
Q  101 aagttgctacaaaagatacttatttatctgttgctagtaacaactattccaatttgactacttctgaatggttgcaaaatttcaatagctatccatcaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37195913 aagttgctacaaaagatacttatttatctgttgctagtaacaattattccaatttgactacttctgaatggttgcaaaatttcaatagctatccatcaaa 37196012  T
Q  201 tgatattcctgatactggaactcttaatgttactgttaattgttcttgtgggaacagtgatgtttccaaggattatggtttgtttattacatatcctctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37196013 tgatattcctgatactggaactcttaatgttactgttaattgttcatgtgggaacagtgatgtttccaaggattatggtttgtttattacatatcctctt 37196112  T
Q  301 agacctgaggattctttggaattgatttctaat 333  Q
    |||||||||||||||||||||||||||||||||    
T  37196113 agacctgaggattctttggaattgatttctaat 37196145  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 224 - 322
Target Start/End: Original strand, 37226985 - 37227083
Alignment:
Q  224 ttaatgttactgttaattgttcttgtgggaacagtgatgtttccaaggattatggtttgtttattacatatcctcttagacctgaggattctttggaat 322  Q
    ||||||| |||||||||||||| ||||||||| | || ||||| || |||||||||||||| ||||||||||||||||||||||| ||  |||||||||    
T  37226985 ttaatgtcactgttaattgttcctgtgggaacggagaggtttcaaaagattatggtttgttcattacatatcctcttagacctgacgacactttggaat 37227083  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 224 - 304
Target Start/End: Original strand, 37207539 - 37207619
Alignment:
Q  224 ttaatgttactgttaattgttcttgtgggaacagtgatgtttccaaggattatggtttgtttattacatatcctcttagac 304  Q
    ||||||||||| |||| ||||| ||||||||||| || ||||||||||||||||||||||| || |||||||| |||||||    
T  37207539 ttaatgttactattaactgttcctgtgggaacagagaggtttccaaggattatggtttgttcatcacatatccacttagac 37207619  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 37440376 - 37440426
Alignment:
Q  33 aagagtgaatgttccattcccttgtgattgcatccatgatgagtttcttgg 83  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37440376 aagagtgaatgttccattcccttgtgattgcatcaatgatgagtttcttgg 37440426  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 37221318 - 37221371
Alignment:
Q  30 tacaagagtgaatgttccattcccttgtgattgcatccatgatgagtttcttgg 83  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  37221318 tacaagagtgaatgttcccttcccttgtgattgcatcaatgatgagtttcttgg 37221371  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 37226791 - 37226844
Alignment:
Q  30 tacaagagtgaatgttccattcccttgtgattgcatccatgatgagtttcttgg 83  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  37226791 tacaagattgaatgttccattcccttgtgattgcatcaatgatgagtttcttgg 37226844  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 302
Target Start/End: Original strand, 37221512 - 37221590
Alignment:
Q  224 ttaatgttactgttaattgttcttgtgggaacagtgatgtttccaaggattatggtttgtttattacatatcctcttag 302  Q
    |||||||||||||||| ||||| ||||||| ||| || ||||| ||||||||||||||||| || ||||| ||||||||    
T  37221512 ttaatgttactgttaactgttcctgtgggagcagagaggtttctaaggattatggtttgttcatcacataccctcttag 37221590  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 320
Target Start/End: Original strand, 37201011 - 37201107
Alignment:
Q  224 ttaatgttactgttaattgttcttgtgggaacagtgatgtttccaaggattatggtttgtttattacatatcctcttagacctgaggattctttgga 320  Q
    |||| |||||||||||||||||||||||||| |  || ||||| | ||||||||| ||||| || |||||||| ||||||  ||||||  |||||||    
T  37201011 ttaaagttactgttaattgttcttgtgggaataaagaggtttctatggattatggattgttcatcacatatccacttagaagtgaggacactttgga 37201107  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 37386967 - 37386871
Alignment:
Q  224 ttaatgttactgttaattgttcttgtgggaacagtgatgtttccaaggattatggtttgtttattacatatcctcttagacctgaggattctttgga 320  Q
    |||||||||||||||| ||||| |||||  |||     ||||||||||||||||||||||| || ||||||||||||||  |||||||  |||||||    
T  37386967 ttaatgttactgttaactgttcctgtggagacaaaatggtttccaaggattatggtttgttcataacatatcctcttagttctgaggacactttgga 37386871  T

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Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 37387141 - 37387090
Alignment:
Q  32 caagagtgaatgttccattcccttgtgattgcatccatgatgagtttcttgg 83  Q
    ||||| ||||||||||||||||||||||||||||  |||| |||||||||||    
T  37387141 caagactgaatgttccattcccttgtgattgcattaatgacgagtttcttgg 37387090  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 296
Target Start/End: Original strand, 37309115 - 37309187
Alignment:
Q  224 ttaatgttactgttaattgttcttgtgggaacagtgatgtttccaaggattatggtttgtttattacatatcc 296  Q
    ||||||| ||||| ||||||||||||||||||||  |  |||| || |||||||| ||||||||||| |||||    
T  37309115 ttaatgtaactgtcaattgttcttgtgggaacagccagatttcaaaagattatggcttgtttattacctatcc 37309187  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 37440556 - 37440643
Alignment:
Q  224 ttaatgttactgttaattgttcttgtgggaacagtgatgtttccaaggattatggtttgtttattacatatcctcttagacctgagga 311  Q
    |||||||||||||||| ||||| |||||  | ||    |||||||||||||||||||||||  | ||||||||||||||  |||||||    
T  37440556 ttaatgttactgttaactgttcctgtggagaaagactggtttccaaggattatggtttgttcgtaacatatcctcttagttctgagga 37440643  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 36193096 - 36193158
Alignment:
Q  190 tatccatcaaatgatattcctgatactggaactcttaatgttactgttaattgttcttgtggg 252  Q
    |||||| | |||||||||||||||||||||||  | |||||||||||||||||||||||||||    
T  36193096 tatccaccgaatgatattcctgatactggaacgttgaatgttactgttaattgttcttgtggg 36193158  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 8739566 - 8739507
Alignment:
Q  226 aatgttactgttaattgttcttgtgggaacagtgatgtttccaaggattatggtttgttt 285  Q
    ||||||||||| ||||||||||||||  | || |||||||| ||||||||||| ||||||    
T  8739566 aatgttactgtaaattgttcttgtggtgatagagatgtttcaaaggattatgggttgttt 8739507  T

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