View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9346_high_1 (Length: 611)
Name: NF9346_high_1
Description: NF9346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9346_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Original strand, 35275339 - 35275797
Alignment:
| Q |
18 |
gaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35275339 |
gaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgct |
35275438 |
T |
|
| Q |
118 |
aaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35275439 |
aaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaatt |
35275538 |
T |
|
| Q |
218 |
gacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtggataggtc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||| |||||||| |
|
|
| T |
35275539 |
gacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacttttgttttgaaacattctagtgagtgtcgataggtc |
35275638 |
T |
|
| Q |
318 |
agaagatggtcctggaatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctccaagctat |
417 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35275639 |
agaagatggtccagggatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctccaagctat |
35275738 |
T |
|
| Q |
418 |
ataaattaattgaaacatggttataggataaacatattgtttatatatagggttaatat |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35275739 |
ataaattaattgaaacatggttataggatacacatattgtttatatatagggttaatat |
35275797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 35289451 - 35289849
Alignment:
| Q |
18 |
gaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgct |
117 |
Q |
| |
|
||||||| ||||||||||||| ||||| ||||||||||||| |||||| ||||| |||||||||||||| || ||||| ||||||||||| ||||| |
|
|
| T |
35289451 |
gaaaagagcttgatcagaatgaagaagtcctttattagcaacaaggtcattatagtaattgttgtcaaaagtaactggagagacagaatcaagaggtgcc |
35289550 |
T |
|
| Q |
118 |
aaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaatt |
217 |
Q |
| |
|
||||| ||||||||||||| ||||| |||||| |||||||||||| || |||||| |||||||||||| ||| |||| ||| ||| |||||||||||| |
|
|
| T |
35289551 |
aaatttatgtcaccaccagaagtaggacaatttgattttcttaaggttgcaaagtttgtgtcaatgttggtttcgttgtatatacgagttctgaaaaatt |
35289650 |
T |
|
| Q |
218 |
gacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtggataggtc |
317 |
Q |
| |
|
|||| || | ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35289651 |
gacattctgcttgacctatggtgtgtgcaccagaaaggacagtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtggataggtc |
35289750 |
T |
|
| Q |
318 |
agaagatggtcctggaatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctccaagcta |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |
|
|
| T |
35289751 |
agaagatggtcctggaatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactacccatgaaggacctccaagcta |
35289849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 26 - 440
Target Start/End: Original strand, 35280114 - 35280528
Alignment:
| Q |
26 |
cttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggt |
125 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| || ||| ||||||||||||||||||| || |||| ||||||||||| || || ||||| || |
|
|
| T |
35280114 |
cttgatcagaattaagaagtcctttattagcaactagatccctataataattgttgtcaaaagtaacaggagagacagaatcaagaggagccaaatttgt |
35280213 |
T |
|
| Q |
126 |
gtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaattgacactca |
225 |
Q |
| |
|
|||||| ||||| ||| || ||| |||||||||||| || |||||| |||| ||||||| |||||||| ||||||||||| |||||||||||| || |
|
|
| T |
35280214 |
gtcaccgccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgttggtttcattgtatatgcgatttcggaaaaattgacattct |
35280313 |
T |
|
| Q |
226 |
gtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtggataggtcagaagatg |
325 |
Q |
| |
|
| ||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| || |
|
|
| T |
35280314 |
gcttggcctatggtgtgtgcaccagaaaggactgtaaggtctcttaatgttagacctttgttttgaaacattttagtgagtgtggataggtcagaagctg |
35280413 |
T |
|
| Q |
326 |
gtcctggaatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctccaagctatataaatta |
425 |
Q |
| |
|
|| || |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||| |||| |
|
|
| T |
35280414 |
gtgaagggatttgggtgtttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactatccatgaaggacctccaagctatatagatta |
35280513 |
T |
|
| Q |
426 |
attgaaacatggtta |
440 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
35280514 |
attgaaacaaggtta |
35280528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 35307249 - 35307647
Alignment:
| Q |
18 |
gaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgct |
117 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||| | |||| ||||| ||||| |||||||| ||||| | |||||||||| || ||||| |||||| |
|
|
| T |
35307249 |
gaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttatcaaaacttgttggagtgagagtatcaagtggtgct |
35307348 |
T |
|
| Q |
118 |
aaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaatt |
217 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||| |||||||| || |||||| |||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
35307349 |
aaattggtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaatt |
35307448 |
T |
|
| Q |
218 |
gacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtggataggtc |
317 |
Q |
| |
|
| ||||| ||| |||||||||||||||||||| || ||||| |||||| || |||||||| ||| | |||||| |||||||| ||||| ||||| |
|
|
| T |
35307449 |
ggcactctccttggcctatggtgtgtgcaccagaaagtactgtgaggtcacttgcagttagacccttggctgaaaacattgtagtgagagtggaaaggtc |
35307548 |
T |
|
| Q |
318 |
agaagatggtcctggaatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctccaagcta |
416 |
Q |
| |
|
|||| ||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
35307549 |
agaaaatggtgaagggatttgactatttgctgcactttggcttgctgttcttgcatctcttcttccaagtggtactacccatgttggtcctccaagcta |
35307647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 35322250 - 35322648
Alignment:
| Q |
18 |
gaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgct |
117 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||| | |||| ||| | ||||| |||||||||||||| || |||||||||| || |||| |||||| |
|
|
| T |
35322250 |
gaaaagagcttgatcagaatggaaaagacctttgcttgcaacaagatttttatagtaattgttgtcaaaatttgttggagtgagagtgtcaagaggtgct |
35322349 |
T |
|
| Q |
118 |
aaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaatt |
217 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||| |||||||| || |||||| |||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
35322350 |
aaattggtgtcaccaccagaaagaggacaatttaatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaatt |
35322449 |
T |
|
| Q |
218 |
gacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtggataggtc |
317 |
Q |
| |
|
| ||||| ||| |||||||||||||||||||| || ||||| |||||| || |||||||| |||| | ||||||| | ||||| ||||| ||||| |
|
|
| T |
35322450 |
ggcactctccttggcctatggtgtgtgcaccagaaagtactgtgaggtcacttgcagttagacccttgtctgtaaacattttggtgagagtggaaaggtc |
35322549 |
T |
|
| Q |
318 |
agaagatggtcctggaatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctccaagcta |
416 |
Q |
| |
|
|||| ||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
35322550 |
agaaaatggtgaagggatttgactatttgctgcactttggcttgctgttcttgcatctcttcttccaagtggtactacccatgttggtcctccaagcta |
35322648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 35311592 - 35312014
Alignment:
| Q |
18 |
gaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgct |
117 |
Q |
| |
|
|||||| |||||||||||||| | |||||||| | |||| ||||| |||||||||||||||||||| | |||||||||| || ||||| |||||| |
|
|
| T |
35311592 |
gaaaaggacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggtgct |
35311691 |
T |
|
| Q |
118 |
aaattggtgtcac---caccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaa |
214 |
Q |
| |
|
|||||||||||| ||| ||| || || || |||||||||||| || |||||| |||||||||||| |||||||| ||||||| ||||||| | |
|
|
| T |
35311692 |
aaattggtgtcattgtcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctgaaca |
35311791 |
T |
|
| Q |
215 |
attgacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtggatag |
314 |
Q |
| |
|
|| ||||||| ||| |||||||||||||||||||| || ||||| || ||| || |||||||| ||| | |||||| ||||||||| ||| ||| |
|
|
| T |
35311792 |
atcgacactctccttggcctatggtgtgtgcaccagaaagtactgtgagatcacttgcagttagacccttggctaaaaacattgtagtgagtctggttag |
35311891 |
T |
|
| Q |
315 |
gtcagaagatggtcctggaatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctccaagc |
414 |
Q |
| |
|
|| | | ||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35311892 |
gttaaaggatggtctagggatttggctatttgctgcactttgatttgctgttcttgcatctcttcttccaagtggtactgtccatgagggtcctccaagc |
35311991 |
T |
|
| Q |
415 |
t--atataaattaattgaaacat |
435 |
Q |
| |
|
| | || ||||||||||||||| |
|
|
| T |
35311992 |
tacaaattaattaattgaaacat |
35312014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 518 - 592
Target Start/End: Original strand, 35275807 - 35275881
Alignment:
| Q |
518 |
aggggtaaaccagaaaccattaatattatagaggttaaacatatattaaccctagtttatatttcatgtcttata |
592 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35275807 |
aggggtaaaccagaaaccattaatattatagaggttaaacatatattaaccctagtttatatttcatgtcttata |
35275881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 496
Target Start/End: Original strand, 42223029 - 42223058
Alignment:
| Q |
467 |
gggttaatatatgtttacccctataatatt |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
42223029 |
gggttaatatatgtttacccctataatatt |
42223058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 519 - 571
Target Start/End: Original strand, 18232084 - 18232138
Alignment:
| Q |
519 |
ggggtaaaccagaaaccattaatattataga--ggttaaacatatattaacccta |
571 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| || ||||||||||||||||||| |
|
|
| T |
18232084 |
ggggtaaaccagaaaccactaatattacagagggggtaaacatatattaacccta |
18232138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 496
Target Start/End: Original strand, 17190497 - 17190534
Alignment:
| Q |
459 |
tatatatagggttaatatatgtttacccctataatatt |
496 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
17190497 |
tatatatatgtttaatatatgtttacccctataatatt |
17190534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 571
Target Start/End: Complemental strand, 9689275 - 9689222
Alignment:
| Q |
518 |
aggggtaaaccagaaaccattaatattatagaggttaaacatatattaacccta |
571 |
Q |
| |
|
||||||||||| |||| | |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
9689275 |
aggggtaaaccggaaatcgctaatattacagagggtaaacatatattaacccta |
9689222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 571
Target Start/End: Complemental strand, 13555652 - 13555599
Alignment:
| Q |
518 |
aggggtaaaccagaaaccattaatattatagaggttaaacatatattaacccta |
571 |
Q |
| |
|
||||||||||| |||| | |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
13555652 |
aggggtaaaccggaaatcgctaatattacagagggtaaacatatattaacccta |
13555599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 548
Target Start/End: Complemental strand, 44228324 - 44228295
Alignment:
| Q |
519 |
ggggtaaaccagaaaccattaatattatag |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
44228324 |
ggggtaaaccagaaaccattaatattatag |
44228295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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