View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9347_low_2 (Length: 501)
Name: NF9347_low_2
Description: NF9347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9347_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 19 - 496
Target Start/End: Original strand, 4844675 - 4845152
Alignment:
| Q |
19 |
tctggcacaaagttgatgcatgacacaaggtatagcactcgtcaccgatatgcatgacacaaagttcgaagagaaatcagctcaggttcaataacgctcc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4844675 |
tctggcacaaagttgatgcatgacacaaggtatagcactcgtcaccgatatgcatgacacaaagttcgaagagaaatcagctcaggttcaataacgctcc |
4844774 |
T |
|
| Q |
119 |
aaatccattggaaatcatctattgcaaatatgatatcttccgaccatttcaaagtagtcggtttcatactagtctcccaaagacctcatatgaccatttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4844775 |
aaatccattggaaatcatctattgcaaatatgatatcttccgaccatttcaaagtagtcggtttcatactagtctcccaaagacctcatatgaccatttc |
4844874 |
T |
|
| Q |
219 |
aaagtagtctatttcatgacaaagtctagtgttgttttcacacaaatttcccttctacttcttaatgtaatgtatatataacaataaataagtgcaactt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
4844875 |
aaagtagtctatttcatgacaaagtctagtgttgttttcacacaaatttcccttctacttctcaatctaatgtatatataacaataaataagtgcaactt |
4844974 |
T |
|
| Q |
319 |
caagcatcctaacactcaacaagaaaaacaaaatctactcttcttcactctattctcacacaacacaactatggcaaaatccataaacaaaaaatttcac |
418 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
4844975 |
caagcatcctaacaatcaacaagaaaaacaaaatctagtcttcttcactctattctcacacaacacaactatgccaaactccataaacaaaaaatttcac |
4845074 |
T |
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| Q |
419 |
actaaaatcaccctactatctatctatttgtttttgttccatctagttattaactcatacaaccctgagtataattta |
496 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || |||||| |
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| T |
4845075 |
actaaaatcaccctactatctatctatttggttttgttccctctagttattaactcatacaaccctgattacaattta |
4845152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 207 - 496
Target Start/End: Original strand, 4710940 - 4711224
Alignment:
| Q |
207 |
tatgaccatttcaaagtagtctatttcatgacaaag-tctagtgttgttttcacacaaatttcccttctacttcttaatgtaatgtatatataacaataa |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4710940 |
tatgaccatttcaaagtagtctatttcatgacaagtctctagtgttgttt-cacacaaatttcccttctacttcttaatgtaatgtatatataacaataa |
4711038 |
T |
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| Q |
306 |
ataagtgcaacttcaagcatcctaacactcaacaagaaaaacaaaatctactcttcttcactctattctcacacaacacaactatggcaaaatccataaa |
405 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| |||||||| |
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| T |
4711039 |
ataaatgcaacttcaagcatcctaacactcaacaagaaaaacaaaatctactcttcttcactctattttc-----acataactatggcaaactccataaa |
4711133 |
T |
|
| Q |
406 |
caaaaaatttcacactaaaatcaccctactatctatctatttgtttttgttccatctagttattaactcatacaaccctgagtataattta |
496 |
Q |
| |
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| ||||||||||||||||||| |||||||||||| |||||||| | ||||||| ||||||| |||||||||||||||||| || |||||| |
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| T |
4711134 |
cgaaaaatttcacactaaaattaccctactatctctctatttgctcttgttccctctagttgctaactcatacaaccctgattacaattta |
4711224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 4709915 - 4709983
Alignment:
| Q |
27 |
aaagttgatgcatgacacaaggtatagcactcgtcaccgatatgcatgacacaaagttcgaagagaaat |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
4709915 |
aaagttgatgcatgacacaaggtatagcaccagtcaccgatatgcatgacacaaagttcaaagagaaat |
4709983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 385 - 484
Target Start/End: Original strand, 4696210 - 4696309
Alignment:
| Q |
385 |
aactatggcaaaatccataaacaaaaaatttcacactaaaatcaccctactatctatctatttgtttttgttccatctagttattaactcatacaaccct |
484 |
Q |
| |
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|||||||||||| |||| |||||||||||||||||||||||||| ||| |||||| || |||| | ||||||| ||||||| || ||||||| ||||| |
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| T |
4696210 |
aactatggcaaactccagaaacaaaaaatttcacactaaaatcatcctgctatctctcattttgctattgttccctctagttgctacctcatacgaccct |
4696309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 295 - 439
Target Start/End: Complemental strand, 4865079 - 4864940
Alignment:
| Q |
295 |
tataacaataaataagtgcaacttcaagcatcctaacactcaacaagaaaaacaaaatctactcttcttcactctattctcacacaacacaactatggca |
394 |
Q |
| |
|
||||| ||||||||| || |||||| ||||| | || |||||||| || |||| |||| | ||||||||| || |||||||||||| ||||||| |
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| T |
4865079 |
tataagaataaataaatgtaacttctagcattccaaacctcaacaacaacaacataatcaatccttcttcaccctcttctcacacaac-----tatggca |
4864985 |
T |
|
| Q |
395 |
aaatccataaacaaaaaatttcacactaaaatcaccctactatct |
439 |
Q |
| |
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|| || |||||||| ||| || ||||||||||||||||||||||| |
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| T |
4864984 |
aactcgataaacaagaaactttacactaaaatcaccctactatct |
4864940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 496
Target Start/End: Complemental strand, 4654559 - 4654451
Alignment:
| Q |
388 |
tatggcaaaatccataaacaaaaaatttcacactaaaatcaccctactatctatctatttgtttttgttccatctagttattaactcatacaaccctgag |
487 |
Q |
| |
|
||||||||| |||||||||||||| || |||| ||||| | | |||||||| ||| |||| | ||||||| |||| || | |||||||||||||||| |
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| T |
4654559 |
tatggcaaactccataaacaaaaacatttacacaaaaatgagcatactatctctctttttgctattgttccctctaattgcttactcatacaaccctgat |
4654460 |
T |
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| Q |
488 |
tataattta |
496 |
Q |
| |
|
|| |||||| |
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| T |
4654459 |
tacaattta |
4654451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 496
Target Start/End: Complemental strand, 4637924 - 4637809
Alignment:
| Q |
381 |
acacaactatggcaaaatccataaacaaaaaatttcacactaaaatcaccctactatctatctatttgtttttgttccatctagttattaactcatacaa |
480 |
Q |
| |
|
||||| |||||||||| |||||||||||||| || |||| ||||||| | ||||||| ||| |||| | | |||| | ||||| |||||||||||| |
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| T |
4637924 |
acacagctatggcaaactccataaacaaaaacatttacacaaaaatcagcatactatccctctttttgctacttttccctttagttgctaactcatacaa |
4637825 |
T |
|
| Q |
481 |
ccctgagtataattta |
496 |
Q |
| |
|
|||||| || |||||| |
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| T |
4637824 |
ccctgattacaattta |
4637809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 4673776 - 4673721
Alignment:
| Q |
381 |
acacaactatggcaaaatccataaacaaaaaatttcacactaaaatcaccctacta |
436 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| | |||| ||||||||||||||| |
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|
| T |
4673776 |
acacagctatggcaaactccataaacaaaaaaaattacacaaaaatcaccctacta |
4673721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 40409809 - 40409777
Alignment:
| Q |
24 |
cacaaagttgatgcatgacacaaggtatagcac |
56 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |
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|
| T |
40409809 |
cacaaagttgatgcatgacacaaggtacagcac |
40409777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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