View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9347_low_3 (Length: 269)
Name: NF9347_low_3
Description: NF9347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9347_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 27878273 - 27878175
Alignment:
| Q |
15 |
cacagacattgtgaaatagctatgtgtaaatttccttttattgtgaggtgcagtatgaacgaatgtaattgtgaacgtgtacactatctaatataagtg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878273 |
cacagacattgtgaaatagctatgtgtaaatttccttttattgtgaggtgtagtatgaacgaatgtaattgtgaacgtgtacactatctaatataagtg |
27878175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 27878056 - 27877959
Alignment:
| Q |
158 |
tctaataactgttttatatttactttcctaatctat-aaacattctaattatggttttgtactctaa---tgatggtaatgaaatggaatatgacaac |
251 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27878056 |
tctaataactgttttatatttactttccaaatctataaaacattctagttatggttttgtactctaatattgatggtaatgaaatggaatatgacaac |
27877959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 29049071 - 29049028
Alignment:
| Q |
22 |
attgtgaaatagctatgtgtaaatttccttttattgtgaggtgc |
65 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
29049071 |
attgtgaaaaaggaatgtgtaaatttccttttattgtgaggtgc |
29049028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University