View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9347_low_5 (Length: 202)
Name: NF9347_low_5
Description: NF9347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9347_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 42884146 - 42883971
Alignment:
| Q |
11 |
gattattcttcttcaaagtgggtgatggaaaatggtgacattcctcatgttctggctgttgatgacaatatcattgatcgcacacttgttgagaaacttc |
110 |
Q |
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| T |
42884146 |
gattcttcttcttcaaagtgggtgatggaaaatggtgacattcctcatgttctggctgttgatgacaatatcattgatcgcacacttgttgagaaacttc |
42884047 |
T |
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| Q |
111 |
tgaagaattcctcttgcaaaggtacgtacacctacctctcactcaaccattttctgttatgttctttttcactttt |
186 |
Q |
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| T |
42884046 |
tgaagaattcctcttgcaaaggtacgtacacctacctctcactcaaccattttctgttatgttctttttcactttt |
42883971 |
T |
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Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 22984494 - 22984665
Alignment:
| Q |
15 |
attcttcttcaaagtgggtgatggaaaatggtgacattcctcatgttctggctgttgatgacaatatcattgatcgcacacttgttgagaaacttctgaa |
114 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| || || |
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| T |
22984494 |
attcttcttcaaagtggatgatggaaaatggtgacattcctcatgttcttgctgttgacgacaatatcattgatcgcacacttgttgagaaacaccttaa |
22984593 |
T |
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| Q |
115 |
gaattcctcttgcaaaggtacgtacacctacctctcactcaaccattttctgttatgttctttttcactttt |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||| |
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| T |
22984594 |
gaattcctcttgcaaaggtacgtacacctacctctcactcaaccattttatgttatattcttttttactttt |
22984665 |
T |
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