View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9348_high_4 (Length: 272)

Name: NF9348_high_4
Description: NF9348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9348_high_4
NF9348_high_4
[»] chr1 (5 HSPs)
chr1 (17-267)||(49149617-49149867)
chr1 (17-100)||(4235703-4235786)
chr1 (17-188)||(49145178-49145352)
chr1 (216-267)||(4235477-4235528)
chr1 (216-267)||(49145070-49145121)
[»] chr7 (2 HSPs)
chr7 (211-255)||(28614715-28614759)
chr7 (219-267)||(29269847-29269895)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 49149867 - 49149617
Alignment:
Q  17 aggtatatccttaaaaggattcattagtgttaaggtagacttagaataatctactaatgcaagccaaccatggctagagccacatacctgaaatttacga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49149867 aggtatatccttaaaaggattcattagtgttaaggtagacttagaataatctactaatgcaagccaaccatggctagagccacatacctgaaatttacga 49149768  T
Q  117 ttggcaaggtataatggatattgaaaagggtaccgtctctcgtttggaatgccatacaaccaattcttctctatcattagcatgggcaatgtgttggtct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  49149767 ttggcaaggtataatggatattgaaaagggtaccgtctctcgtttggaatgccatacaaccaattcttctccatcattagcatgggcaatgtgttggtct 49149668  T
Q  217 tgatggttaagctttgcaattgatcgccaactcttgcacgcaacaccaaac 267  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  49149667 tgatggttaagctttgcaattgatcgccaactcttgcacacagcaccaaac 49149617  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 4235786 - 4235703
Alignment:
Q  17 aggtatatccttaaaaggattcattagtgttaaggtagacttagaataatctactaatgcaagccaaccatggctagagccaca 100  Q
    ||||||||||||||||||| ||||||| ||||   | |||||||||| |||||||||||||| |||||||||||||||||||||    
T  4235786 aggtatatccttaaaaggactcattagggttataatggacttagaatcatctactaatgcaaaccaaccatggctagagccaca 4235703  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 49145352 - 49145178
Alignment:
Q  17 aggtatatccttaaaaggattcattagtgttaaggtagacttagaataatctactaatgcaagccaaccatggctagagccacatacctgaaatttac-- 114  Q
    |||| |||||||||||||| ||||||| ||||   | ||||| |||| |||||| ||||||| ||||||||||||||||||||| | |  || |||||      
T  49145352 aggtgtatccttaaaaggactcattagggttataatggacttggaatcatctacaaatgcaaaccaaccatggctagagccacagagcgaaagtttacta 49145253  T
Q  115 -gattggcaaggtataatggatattgaaaagggtaccgtctctcgtttggaatgccatacaaccaattcttctct 188  Q
      ||| ||| || ||||  || |||||||||||| || ||| | |||| |||| |||||||||||||||||||||    
T  49145252 ttattagcatggcataactgaaattgaaaagggtgccatcttttgtttagaataccatacaaccaattcttctct 49145178  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 4235528 - 4235477
Alignment:
Q  216 ttgatggttaagctttgcaattgatcgccaactcttgcacgcaacaccaaac 267  Q
    ||||||||||| |||||||||||||||||||||||||||| || ||||||||    
T  4235528 ttgatggttaaactttgcaattgatcgccaactcttgcacacagcaccaaac 4235477  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 49145121 - 49145070
Alignment:
Q  216 ttgatggttaagctttgcaattgatcgccaactcttgcacgcaacaccaaac 267  Q
    ||||||| ||| ||||||||||||||||||| |||||||| || ||||||||    
T  49145121 ttgatggctaaactttgcaattgatcgccaagtcttgcacacagcaccaaac 49145070  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 28614759 - 28614715
Alignment:
Q  211 tggtcttgatggttaagctttgcaattgatcgccaactcttgcac 255  Q
    |||| |||||||||||||||||||| |||||||||| ||||||||    
T  28614759 tggttttgatggttaagctttgcaactgatcgccaagtcttgcac 28614715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 29269895 - 29269847
Alignment:
Q  219 atggttaagctttgcaattgatcgccaactcttgcacgcaacaccaaac 267  Q
    |||||||||||||||||||||| | |||||||||||| | |||||||||    
T  29269895 atggttaagctttgcaattgataggcaactcttgcacaccacaccaaac 29269847  T

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