View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9348_low_10 (Length: 356)

Name: NF9348_low_10
Description: NF9348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9348_low_10
NF9348_low_10
[»] chr8 (2 HSPs)
chr8 (17-352)||(4065952-4066272)
chr8 (17-352)||(4060779-4061099)
[»] chr6 (1 HSPs)
chr6 (17-335)||(21285931-21286234)
[»] scaffold0016 (1 HSPs)
scaffold0016 (17-148)||(31373-31504)


Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 4066272 - 4065952
Alignment:
Q  17 agaatcttactccatggttgaaacttcttccttgtcgagacaaagctggactttcagccttaatggatagaccatctatttacgggaatttttatcattc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4066272 agaatcttactccatggttgaaacttcttccttgtcgagacaaagctggactttcagccttaatggatagaccatctatttacgggagtttttatcattc 4066173  T
Q  117 acagcgattgcacttgacagcatccagagctcctgcagatgggttagattctggagttattctagaacaaacacttacagttgtacttcagcctaatgtt 216  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4066172 acagcgattgcacttgacagcatccagtgctcctgcagatgggttagattctggagttattctagaacaaacacttacagttgtacttcagcctaatgtt 4066073  T
Q  217 cagagagccgatgttcagagagccggtatgagttatcacgatgaaataaagattcaaccaagctggtctttaagctcaatatttggacaaaaagtgaatg 316  Q
    ||||||               ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4066072 cagaga---------------gccggtatgagttatcatgatgaaataaagattcaaccaagctggtctttaagctcaatatttggacaaaaagtgaatg 4065988  T
Q  317 gaagatgtgttcttgctaaatcgagtattatctacc 352  Q
    ||||||||||||||||||||||||||| | ||||||    
T  4065987 gaagatgtgttcttgctaaatcgagtaatgtctacc 4065952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 4061099 - 4060779
Alignment:
Q  17 agaatcttactccatggttgaaacttcttccttgtcgagacaaagctggactttcagccttaatggatagaccatctatttacgggaatttttatcattc 116  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  4061099 agaatcttactccatggttgaaactccttccttgtcgagataaagctggactttcagccttaatggatagaccatctatttacaggagtttttatcattc 4061000  T
Q  117 acagcgattgcacttgacagcatccagagctcctgcagatgggttagattctggagttattctagaacaaacacttacagttgtacttcagcctaatgtt 216  Q
    ||| ||||||||| |||||||||||| ||||| ||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||            
T  4060999 acaacgattgcacctgacagcatccaaagctcttgcagatgggttagaatcaggaattattctagaacaaacacttacagttgtacttcagc-------- 4060908  T
Q  217 cagagagccgatgttcagagagccggtatgagttatcacgatgaaataaagattcaaccaagctggtctttaagctcaatatttggacaaaaagtgaatg 316  Q
           ||||| |||||||||| ||| |||| | || ||||||||||||||||||||||||||||||| | |||||||||||||||| |||| | ||||    
T  4060907 -------ccgatattcagagagctggtttgagctctcccgatgaaataaagattcaaccaagctggtctctgagctcaatatttggacgaaaaatcaatg 4060815  T
Q  317 gaagatgtgttcttgctaaatcgagtattatctacc 352  Q
    | || |||||||||||||| ||||||| | ||||||    
T  4060814 gtaggtgtgttcttgctaagtcgagtaatgtctacc 4060779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 21285931 - 21286234
Alignment:
Q  17 agaatcttactccatggttgaaacttcttccttgtcgagacaaagctggactttcagccttaatggatagaccatctatttacgggaatttttatcattc 116  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||  || ||||||| ||||    
T  21285931 agaatcttactccatggttgaaactccttccttgtcgagataaagctggactttcaaccttaatggatagaccatctacttacacgagtttttatgattc 21286030  T
Q  117 acagcgattgcacttgacagcatccagagctcctgcagatgggttagattctggagttattctagaacaaacacttacagttgtacttcagcctaatgtt 216  Q
    ||| ||||||||| |||||||||||| |||||||| |||| |||||||||| ||| | ||||||||||||||||||||| ||||||||||||||          
T  21286031 acaacgattgcacctgacagcatccaaagctcctgaagataggttagattcaggaatcattctagaacaaacacttacacttgtacttcagcct------ 21286124  T
Q  217 cagagagccgatgttcagagagccggtatgagttatcacgatgaaataaagattcaaccaagctggtctttaagctcaatatttggacaaaaagtgaatg 316  Q
             ||| |||||||||| |||||||| | || ||||||||||||||||||||| ||||| ||| | |||||||||||||||  |||| | ||||    
T  21286125 ---------gatattcagagagctggtatgagctctcccgatgaaataaagattcaacctagctgctctctgagctcaatatttggatgaaaaatcaatg 21286215  T
Q  317 gaagatgtgttcttgctaa 335  Q
    | |  ||||||||||||||    
T  21286216 gtaagtgtgttcttgctaa 21286234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 31504 - 31373
Alignment:
Q  17 agaatcttactccatggttgaaacttcttccttgtcgagacaaagctggactttcagccttaatggatagaccatctatttacgggaatttttatcattc 116  Q
    ||||||||||||||||||||||||| ||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31504 agaatcttactccatggttgaaactccttccttgttgagataaagctagactttcagccttaatggatagaccatctatttacgggagtttttatcattc 31405  T
Q  117 acagcgattgcacttgacagcatccagagctc 148  Q
    ||| | ||||||| ||||||||||||||||||    
T  31404 acaaccattgcacctgacagcatccagagctc 31373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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