View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9348_low_11 (Length: 339)
Name: NF9348_low_11
Description: NF9348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9348_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 324
Target Start/End: Complemental strand, 3633083 - 3632778
Alignment:
| Q |
20 |
cagggatgatttcaggtttgtgttccacatcggccaaagcctctttgagttcatcaattttagactcgtctctaagagctactaactcaggcttaaataa |
119 |
Q |
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| T |
3633083 |
cagggatgatttcaggtttgtgatcaataccagccaaagcctctttgagctcatcgattttagactcatctctaagagctactaactcaggcttaaatat |
3632984 |
T |
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| Q |
120 |
ccttacctgcacaatattaaaaactaggaaaatgagatatactcgaaaccaacgtagcaccaacacctcagattgaagaagtgtatggtatccaacatgt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| |||||||||| ||||| || | ||||||||||||||||||| |
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| T |
3632983 |
ccttacctgcacaatattaaaaactaggaaaatgagatatacacgaaaccgatgtagtaccaacaccttagattaaaaatatgtatggtatccaacatgt |
3632884 |
T |
|
| Q |
220 |
gtcagtgtccgacacgacactgacacattagattgagttatttcattttctcaagtgattacttatgtcgac-atttaggatcatgttcgatatttgtgc |
318 |
Q |
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|||||||||| ||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| ||| ||||| |||||| ||||||||||||| |
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| T |
3632883 |
gtcagtgtccaacacgacactgacacattacatcgagttatttcattttctcaactgattacttatgttgacgttttagtatcatgatcgatatttgtgc |
3632784 |
T |
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| Q |
319 |
ttgtat |
324 |
Q |
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|||||| |
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| T |
3632783 |
ttgtat |
3632778 |
T |
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