View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9348_low_12 (Length: 300)
Name: NF9348_low_12
Description: NF9348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9348_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 209
Target Start/End: Original strand, 30855857 - 30856010
Alignment:
| Q |
55 |
cattattattttttagacttgaaaaatatcattttcagttggcnnnnnnnaaaatnnnnnnnnttcaacatgtgtttttcatccgtatctgtatgaaatt |
154 |
Q |
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| T |
30855857 |
cattactattttttagacttgaaaaatatcattttcagttggctttttttaaaataaaaaaaattcaacgtgtgtttttcatccgtatccgtatgaaatt |
30855956 |
T |
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| Q |
155 |
aacaaattttgttttcattccttacaaaaaatttcttcaacttttaatccttcta |
209 |
Q |
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| T |
30855957 |
aacaaattttgtttttattccttacaaaaaaaat-ttcaacttttaatccttcta |
30856010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 30856044 - 30856110
Alignment:
| Q |
220 |
gtcatcgctcttgtgtcccgccgttatgtccatacaaatgtgtttaacaaatgtcgaagtggccagt |
286 |
Q |
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| T |
30856044 |
gtcatcgcttttgagtcccgccgttatatccatacaaatgtgtttaacgaatatcaaagtgaccagt |
30856110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 30855585 - 30855617
Alignment:
| Q |
19 |
tgattgtgcatatctcaaaactgccttataaaa |
51 |
Q |
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| T |
30855585 |
tgattgtgcatatctcaaaactgccttataaaa |
30855617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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