View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9348_low_13 (Length: 285)
Name: NF9348_low_13
Description: NF9348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9348_low_13 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold1211 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 81 - 285
Target Start/End: Complemental strand, 26378486 - 26378282
Alignment:
| Q |
81 |
gcacctcacataaggccttccaacatgcttcagacttatcatattggtgtgtccattcaatagccattgcgtattcaatattattgggctgtgaacaatg |
180 |
Q |
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| T |
26378486 |
gcacctcacataaggccttccaacatgcttcagacttatcatattggtgtgtccattcaatagccattgcgtattcaatattattgggctgtgaacaatg |
26378387 |
T |
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| Q |
181 |
tgatgtcgatacagcatttctctataacacgtaaagaaggcactgtaaatcatattttctagtatgcggtaaaactaattgatcagcaagttgagttaaa |
280 |
Q |
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| T |
26378386 |
tgatgtcgatacagcatttctctataacacgtaaagaaggcactgtaaatcatatttactagtatgcggtaaaactaattgatcagcaagttgagttaaa |
26378287 |
T |
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| Q |
281 |
ctacc |
285 |
Q |
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||||| |
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| T |
26378286 |
ctacc |
26378282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 26378543 - 26378501
Alignment:
| Q |
14 |
tcaaaaagaagtttgactaacaagattgaagaggatcattggc |
56 |
Q |
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| T |
26378543 |
tcaaaaagaagtttgaccaacaagattgaagaggatcattggc |
26378501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 82 - 285
Target Start/End: Complemental strand, 2379 - 2175
Alignment:
| Q |
82 |
cacctcacataaggccttccaacatgcttcagacttatcatattggtgtgtccattcaatagccattgcgtattcaatattattgggctgtgaacaatgt |
181 |
Q |
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| T |
2379 |
cacctcacatatgtacttccaacatgcttctgacttatcatattgatgtgcccattcgatggccatcgcatattcaattgtattagactgtgaacaatgt |
2280 |
T |
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| Q |
182 |
gatgtcgatacagcatttctctat-aacacgtaaagaaggcactgtaaatcatattttctagtatgcggtaaaactaattgatcagcaagttgagttaaa |
280 |
Q |
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| T |
2279 |
gatgttgatacagcatttctctataaaaaagaaaagaacatattgtaaatcatgttttccggtatgtggtaaaattaattgataagcaagttgagttaga |
2180 |
T |
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| Q |
281 |
ctacc |
285 |
Q |
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||||| |
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| T |
2179 |
ctacc |
2175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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