View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9348_low_16 (Length: 273)
Name: NF9348_low_16
Description: NF9348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9348_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 56 - 264
Target Start/End: Original strand, 41481816 - 41482024
Alignment:
| Q |
56 |
agaatactctccatcctttttctagaacaaacttacagcagatgtcatctacttttcatgacattggtcacatgttttcgtactctagaatggtttcttt |
155 |
Q |
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| T |
41481816 |
agaatactctccatcctttttctagaacaaacttacagcagatgtcatctacttttcttgacattggtcacatgttttcgtactctagaatggtttcttt |
41481915 |
T |
|
| Q |
156 |
attggcaaagttgtgaagccacacctcgtagtcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgattt |
255 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41481916 |
attggcaaagttgtgaagccacacctcgtaatcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgattt |
41482015 |
T |
|
| Q |
256 |
cagaattat |
264 |
Q |
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||||||||| |
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| T |
41482016 |
cagaattat |
41482024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 74 - 258
Target Start/End: Original strand, 41485100 - 41485285
Alignment:
| Q |
74 |
tttctagaacaaactt-acagcagatgtcatctacttttcatgacattggtcacatgttttcgtactctagaatggtttctttattggcaaagttgtgaa |
172 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||| |||| | | ||||| |
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| T |
41485100 |
tttctagaacaaactttacagcagatgtcatctacttttcttgtcattggtgacatgttttcgcactctagaatggtttctttatgggcagaatagtgaa |
41485199 |
T |
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| Q |
173 |
gccacacctcgtagtcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcag |
258 |
Q |
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| T |
41485200 |
gccacacctcatattcacatgttttgctggaaccacaagattcgcaactagtactattccgtgcttgttgctagggataatttcag |
41485285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 41481128 - 41481187
Alignment:
| Q |
1 |
gattatgttcaactacataacactaaaatctccctttttctctaaaatcagtatcagaat |
60 |
Q |
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| T |
41481128 |
gattatgttcaactacataacactaaaatctccctttttctctaaaatcagtattagaat |
41481187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 45386193 - 45386079
Alignment:
| Q |
83 |
caaacttacagcagatgtcatctacttttcatgacattggtcacatgttttcgtactctagaatggtttctttattggcaaagttgtgaagccacacctc |
182 |
Q |
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| T |
45386193 |
caaacttatatcaaatttcatctacttttcttgtcattggtggcatgttttcgcactctagaatggtttctttataggcagagttgtgaagccacgcctc |
45386094 |
T |
|
| Q |
183 |
gtagtcacatgtttt |
197 |
Q |
| |
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|| ||||||||||| |
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| T |
45386093 |
atattcacatgtttt |
45386079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 45386052 - 45385989
Alignment:
| Q |
195 |
tttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcag |
258 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45386052 |
tttgcagtaaccacaagattcacaactagtactattttgtacttgttgcttgggatgatttcag |
45385989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 5701301 - 5701187
Alignment:
| Q |
144 |
aatggtttctttattggcaaagttgtgaagccacacctcgtagtcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgc |
243 |
Q |
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||||||||||| || || | |||||||||||||||||| || ||||||||||||||| |||||||| |||||| |||||| |||| | |||||||||| |
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| T |
5701301 |
aatggtttcttcatgggaagtgttgtgaagccacacctcatactcacatgttttgcagaaaccacaagattcacgactagttctatctggtgcttgttgt |
5701202 |
T |
|
| Q |
244 |
ttgggatgatttcag |
258 |
Q |
| |
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||| ||||||||||| |
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| T |
5701201 |
ttgagatgatttcag |
5701187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 5697834 - 5697764
Alignment:
| Q |
188 |
cacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcag |
258 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
5697834 |
cacatgttttgcattaaccccaaaattcacaactagtactattttgtgcttgttgcttgagataatttcag |
5697764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 5694873 - 5694785
Alignment:
| Q |
170 |
gaagccacacctcgtagtcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcag |
258 |
Q |
| |
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|||||||||| || | |||||||||||||| ||||| || ||||||||||||||||||||| ||||||||||||| ||| ||||||| |
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| T |
5694873 |
gaagccacacttcattttcacatgttttgcaataaccctaaaattcacaactagtactattttttgcttgttgcttgagataatttcag |
5694785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 5736485 - 5736414
Alignment:
| Q |
187 |
tcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcag |
258 |
Q |
| |
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|||||||||||||| ||||| || ||||||||||||||||||||| |||||||| |||| ||| ||||||| |
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| T |
5736485 |
tcacatgttttgcaataaccctaaaattcacaactagtactattttttgcttgtttcttgagataatttcag |
5736414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 5773597 - 5773526
Alignment:
| Q |
187 |
tcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcag |
258 |
Q |
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|||||||||||||| ||||| || ||||||||||||||||||||| |||||||| |||| ||| ||||||| |
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| T |
5773597 |
tcacatgttttgcaataaccctaaaattcacaactagtactattttttgcttgtttcttgagataatttcag |
5773526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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