View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9348_low_18 (Length: 272)
Name: NF9348_low_18
Description: NF9348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9348_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 49149867 - 49149617
Alignment:
| Q |
17 |
aggtatatccttaaaaggattcattagtgttaaggtagacttagaataatctactaatgcaagccaaccatggctagagccacatacctgaaatttacga |
116 |
Q |
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| T |
49149867 |
aggtatatccttaaaaggattcattagtgttaaggtagacttagaataatctactaatgcaagccaaccatggctagagccacatacctgaaatttacga |
49149768 |
T |
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| Q |
117 |
ttggcaaggtataatggatattgaaaagggtaccgtctctcgtttggaatgccatacaaccaattcttctctatcattagcatgggcaatgtgttggtct |
216 |
Q |
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| T |
49149767 |
ttggcaaggtataatggatattgaaaagggtaccgtctctcgtttggaatgccatacaaccaattcttctccatcattagcatgggcaatgtgttggtct |
49149668 |
T |
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| Q |
217 |
tgatggttaagctttgcaattgatcgccaactcttgcacgcaacaccaaac |
267 |
Q |
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| T |
49149667 |
tgatggttaagctttgcaattgatcgccaactcttgcacacagcaccaaac |
49149617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 4235786 - 4235703
Alignment:
| Q |
17 |
aggtatatccttaaaaggattcattagtgttaaggtagacttagaataatctactaatgcaagccaaccatggctagagccaca |
100 |
Q |
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| T |
4235786 |
aggtatatccttaaaaggactcattagggttataatggacttagaatcatctactaatgcaaaccaaccatggctagagccaca |
4235703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 49145352 - 49145178
Alignment:
| Q |
17 |
aggtatatccttaaaaggattcattagtgttaaggtagacttagaataatctactaatgcaagccaaccatggctagagccacatacctgaaatttac-- |
114 |
Q |
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| T |
49145352 |
aggtgtatccttaaaaggactcattagggttataatggacttggaatcatctacaaatgcaaaccaaccatggctagagccacagagcgaaagtttacta |
49145253 |
T |
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| Q |
115 |
-gattggcaaggtataatggatattgaaaagggtaccgtctctcgtttggaatgccatacaaccaattcttctct |
188 |
Q |
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||| ||| || |||| || |||||||||||| || ||| | |||| |||| ||||||||||||||||||||| |
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| T |
49145252 |
ttattagcatggcataactgaaattgaaaagggtgccatcttttgtttagaataccatacaaccaattcttctct |
49145178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 4235528 - 4235477
Alignment:
| Q |
216 |
ttgatggttaagctttgcaattgatcgccaactcttgcacgcaacaccaaac |
267 |
Q |
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| T |
4235528 |
ttgatggttaaactttgcaattgatcgccaactcttgcacacagcaccaaac |
4235477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 49145121 - 49145070
Alignment:
| Q |
216 |
ttgatggttaagctttgcaattgatcgccaactcttgcacgcaacaccaaac |
267 |
Q |
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||||||| ||| ||||||||||||||||||| |||||||| || |||||||| |
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| T |
49145121 |
ttgatggctaaactttgcaattgatcgccaagtcttgcacacagcaccaaac |
49145070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 28614759 - 28614715
Alignment:
| Q |
211 |
tggtcttgatggttaagctttgcaattgatcgccaactcttgcac |
255 |
Q |
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|||| |||||||||||||||||||| |||||||||| |||||||| |
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| T |
28614759 |
tggttttgatggttaagctttgcaactgatcgccaagtcttgcac |
28614715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 29269895 - 29269847
Alignment:
| Q |
219 |
atggttaagctttgcaattgatcgccaactcttgcacgcaacaccaaac |
267 |
Q |
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| T |
29269895 |
atggttaagctttgcaattgataggcaactcttgcacaccacaccaaac |
29269847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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