View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9348_low_20 (Length: 230)
Name: NF9348_low_20
Description: NF9348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9348_low_20 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 41231027 - 41230798
Alignment:
| Q |
1 |
ggaaaagcgaccaatttggagaatggtcggtcgagtgaagctgatctaacagaaaactgaacataaaacccgtaaagcttccagaaggagctccttcctg |
100 |
Q |
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| T |
41231027 |
ggaaaagcgaccaatttggagaatggtcggtcgagtgaagctgatctaacagaaaactgaacataaaacccgtaaagcttccagaaggagctccttcctg |
41230928 |
T |
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| Q |
101 |
caaaattcatacgcttgataactttcttgcatccctcccttcaaggtagatttttaaggagatgcagcagcttagagtagatttaatcaaccgattacta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
41230927 |
caaaattcatacgcttgataactttcttgcatccctcccttcaaggtagatttttaaggagatgcagcagcttagagtagactcaatcaaccgattacta |
41230828 |
T |
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| Q |
201 |
ctagaagaaattttaaaacatcagaaagaa |
230 |
Q |
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| T |
41230827 |
ctagaagaaattttaaaacattagaaagaa |
41230798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Complemental strand, 6110339 - 6110308
Alignment:
| Q |
35 |
gtgaagctgatctaacagaaaactgaacataa |
66 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
6110339 |
gtgaagctgatctaacagaaaactgaacataa |
6110308 |
T |
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