View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9348_low_22 (Length: 223)
Name: NF9348_low_22
Description: NF9348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9348_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 35 - 206
Target Start/End: Original strand, 9112267 - 9112436
Alignment:
| Q |
35 |
aatgtactactgtcataatatgaaaagagatgagtcaaatatatgtactacggtctaatttaagcaacatgataagacattgtcacagaaaacgtgaaac |
134 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9112267 |
aatgtacgactgtcataatatgaaaagagatgagtcaaatat--gtactacggcctaatttaagcaacgtgataagacattgtcacagaaaacgtgaaac |
9112364 |
T |
|
| Q |
135 |
acattaaccacccaaaaaattcaaacaacataataactccaagtacaaaaatttgcaatggatccaccacat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9112365 |
acattaaccacccaaaaaattcaaacaacataataactccaagtacaggaatttgcaatggatccaccacat |
9112436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 9111251 - 9111328
Alignment:
| Q |
132 |
aacacattaaccacccaaaaaattcaaacaaca---taataactccaagtacaaaaatttgcaatggatccaccacat |
206 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
9111251 |
aacacattaaccactctaaaaattcaaacaacacaataataactccaagtacagaaatttgcaatggatccgccacat |
9111328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University