View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9348_low_3 (Length: 530)
Name: NF9348_low_3
Description: NF9348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9348_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 43453191 - 43452834
Alignment:
| Q |
19 |
attctctctaaacaattttacctttggtattgctttgcatgcgtatgtcttcccggttgatttctccaaacaaagtgaagtagttccaaactttcctttc |
118 |
Q |
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| T |
43453191 |
attctctctaaacaattttacctttggtattgctttgcatgcgtatgtcttcctggttgatttctccaaacaaagtgaagtagttccaaactttcctttc |
43453092 |
T |
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| Q |
119 |
ccaagttcatctcctaacttataaaattccctaaaaggaccattgtttgtcaacaaaaccgattctgctcgaagacctgcactttttggtgttaccctcc |
218 |
Q |
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| T |
43453091 |
ccaagttcatctcctaacttataaaattccctaaaaggaccattgtttgtcaacaaaaccgattctgctcgaagacctgcactttttggtgttaccctcc |
43452992 |
T |
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| Q |
219 |
taatattaatattttttgacatcattgtttttgttggtgtagctttttccttcaactgtataactggttctgcatcttcttgtgatatgctagtttgttt |
318 |
Q |
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| T |
43452991 |
taatattaatattttttgacatcattgtttttgttggtgtagctttttccttcaactgtgtaactggttctgcatcttcttgtgatatgctagtttgtct |
43452892 |
T |
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| Q |
319 |
gtctgaagcagtattagactgctgaagtgtcttcatgtctttgttctcaattttttgaaca |
379 |
Q |
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| T |
43452891 |
gtctgaagcagtattaga---ctgaagtgtcttcatgtctttgttctcaattttgtgaaca |
43452834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 29 - 216
Target Start/End: Complemental strand, 43462620 - 43462433
Alignment:
| Q |
29 |
aacaattttacctttggtattgctttgcatgcgtatgtcttcccggttgatttctccaaacaaagtgaagtagttccaaactttcctttcccaagttcat |
128 |
Q |
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| T |
43462620 |
aacaatttcacctttgggattaccttgcatgcatacgttttcccggttgatttctccaaacaaagtgaagtagttccaaattccccttctccaagttcat |
43462521 |
T |
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| Q |
129 |
ctcctaacttataaaattccctaaaaggaccattgtttgtcaacaaaaccgattctgctcgaagacctgcactttttggtgttaccct |
216 |
Q |
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| T |
43462520 |
ctcctaactcatagtattccttaaaagaaccattgtttgacaacaaaattgattcttctcgaagacctgcactttttgctgttaccct |
43462433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 453 - 519
Target Start/End: Complemental strand, 43452760 - 43452694
Alignment:
| Q |
453 |
gatatgaccatgacaatgaccatggccaccaaaatgaagtttgaaaactttcatgttcacaggttct |
519 |
Q |
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| T |
43452760 |
gatatgaccatgacaatgaccatggccaccaaaatgaagtttgaaaactttcatgttcataggttct |
43452694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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