View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9348_low_7 (Length: 411)
Name: NF9348_low_7
Description: NF9348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9348_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 3e-95; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 23672368 - 23672561
Alignment:
| Q |
18 |
cttgtaactaactaataactattcattcagtttttacatatttaaactttgttagtgtctttgaaaaatagtactatccatctctacttgtgtcctatat |
117 |
Q |
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| T |
23672368 |
cttgtaactaactaataactattcattcagtttttacatatttaaact--gttagtgtctttgaaaaatagtactatccatctctacctgtgtcctatat |
23672465 |
T |
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| Q |
118 |
gaaacaatatgactgatgatctactcctttaaagtacgtatcaaaggtagaatgccaatcaaacaatttgagtaatgactacaacctcagaatgta |
213 |
Q |
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| T |
23672466 |
gaaacaatatgactgatgatctactccattaaagtacgtatcaaaggtagaatgccaatcaaacaatttgagtaatgactacaacctcagaatgta |
23672561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 205 - 362
Target Start/End: Original strand, 23679110 - 23679269
Alignment:
| Q |
205 |
cagaatgtattagatctcacaaaatcttctataaaccaatagag--agatacattgtcaactgaaatatgctgcaattatcataccaaagcaatatgttt |
302 |
Q |
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| T |
23679110 |
cagaatgtattagatctcacaaaatcttctataaaccaatagagagagatacattgtcaactgaaatatgctgcaattatcatatcaaagcaatatgttt |
23679209 |
T |
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| Q |
303 |
agatgacacaagtatcatatgtaaagaaatgctattattttctaagaaatatttgtctta |
362 |
Q |
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| T |
23679210 |
agatgacacaagtatcatatgtaaagaaatgctattattttctgagaaatatttgtctta |
23679269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 36 - 180
Target Start/End: Original strand, 23646386 - 23646527
Alignment:
| Q |
36 |
ctattcattcagtttttacatatttaaactttgttagtgtctttgaaaaatagtactatccatctctacttgtgtcctatatgaaacaatatgactgatg |
135 |
Q |
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| T |
23646386 |
ctattcattcagtgtttacatatctaaactttgttagtgtctttaaaaaatagtactgtccatttctacttgtgtcctatatgaaacaatatgtc---tg |
23646482 |
T |
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| Q |
136 |
atctactcctttaaagtacgtatcaaaggtagaatgccaatcaaa |
180 |
Q |
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| T |
23646483 |
atctactcctttacggtacgtatcaaaggtagaatgtcaatcaaa |
23646527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 23614218 - 23614259
Alignment:
| Q |
36 |
ctattcattcagtttttacatatttaaactttgttagtgtct |
77 |
Q |
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| T |
23614218 |
ctattcattcaatgtttacatatctaaactttgttagtgtct |
23614259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 23747087 - 23747139
Alignment:
| Q |
197 |
tacaacctcagaatgtattagatctcacaaaatcttctataaaccaatagaga |
249 |
Q |
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|||||| ||| |||||| | ||||||||| |||||||||| |||||||||||| |
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| T |
23747087 |
tacaacatcataatgtactggatctcacagaatcttctatgaaccaatagaga |
23747139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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