View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9348_low_8 (Length: 402)
Name: NF9348_low_8
Description: NF9348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9348_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 34 - 386
Target Start/End: Complemental strand, 1217026 - 1216674
Alignment:
| Q |
34 |
aagcaaaaataagaaagtagttcataaatcaatacagttccaaaccaaatcttctacgcctcaataaaaagtctcattgttgcaaattaaggtcccatgc |
133 |
Q |
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| T |
1217026 |
aagcaaaaataagaaaatagttcataaatcaatacagttccaaaccaaatcttccacgcctcaataaaaagtctcattgttgcaaattaaggtcccatgc |
1216927 |
T |
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| Q |
134 |
agctccaattctgataagcatattactaacctaacctcccatcttttatttctaccaaatacaaagcatgctaactgctaagatgacattaggtcccaat |
233 |
Q |
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| T |
1216926 |
agcaccaattctgataagcatattactaacctaacctcccatattttatttctaccaaatacaaagcatgctaactgctaagatgacattagggcccaat |
1216827 |
T |
|
| Q |
234 |
tgccttatcatgaacagcaagccataatagatagcaaaaagaccaatttaaaggttgaaaatttgatattgatattacacacatctacatgcttcatgct |
333 |
Q |
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| T |
1216826 |
tgccttatcataaacagcaagccataatagatagcaaaaagaccaatttaaaggttgaaaatttgatattgatattacacacatctacatgcttcatgct |
1216727 |
T |
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| Q |
334 |
tgtgttccaactatgtcaaactagcttaataccgagaattggcacaagaaaga |
386 |
Q |
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| T |
1216726 |
tgtgttccaactatgctaaactagcttaataccgagaattggcacaagaaaga |
1216674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 41089354 - 41089252
Alignment:
| Q |
75 |
aaaccaaatcttctacgcctcaataaaaagt-ctcattgttgcaaattaaggtcccatg----------cagctccaattctgataagcatattactaac |
163 |
Q |
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| T |
41089354 |
aaaccaaatcttctacgcctcaacaaaaaattctcattcttgcatattaaggtcacatgaatcatgatgcagctccaattctcataagcatattactaac |
41089255 |
T |
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| Q |
164 |
cta |
166 |
Q |
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||| |
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| T |
41089254 |
cta |
41089252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 41103675 - 41103641
Alignment:
| Q |
131 |
tgcagctccaattctgataagcatattactaacct |
165 |
Q |
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| T |
41103675 |
tgcagctccaattctgataagcatattactaacct |
41103641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 41103780 - 41103704
Alignment:
| Q |
20 |
cacacttctgaacaaagcaaaaataagaaagtagttcataaatcaatacagttcc-aaaccaaatcttctacgcctca |
96 |
Q |
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| T |
41103780 |
cacacttctaaacaa-gcaaaaaccagaaaatagttcataatccaatacagttccaaaaccaaatcttctatgcctca |
41103704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 4132153 - 4132306
Alignment:
| Q |
16 |
acaccacacttctgaacaaagcaaaaataagaaagtagttcataaatcaatacagttccaaa-ccaaatcttctacgcctcaataaaaagtctcattgtt |
114 |
Q |
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|||||||||||| ||||| ||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| | |
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| T |
4132153 |
acaccacacttccaaacaa-gcaaaaactagaaaatagttcataaaccaatacagttccaaaaccaaatcttctacgcctcaacaaaaagtctcattgct |
4132251 |
T |
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| Q |
115 |
gcaaattaaggtcc-------catgcagctccaattctgataagcatattactaa |
162 |
Q |
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||| ||| |||||| |||| |||||||||||||||||| |||||||||| |
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| T |
4132252 |
gcatattgaggtcccatgaatcatgtagctccaattctgataagtatattactaa |
4132306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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