View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9349_high_21 (Length: 240)
Name: NF9349_high_21
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_high_21 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 47677953 - 47678175
Alignment:
| Q |
18 |
aagatgtggtgttaagattcgcttgtgtgattgctcttagtccaatatattgttacgtaataccaaaggtgttgctctctcgaaagtggttcgttagatt |
117 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47677953 |
aagatgtgatgttaagattcacttgtgtgattgctcttagtccaatatattattacgtaataccaaaggtgttgctctttcgaaagtggttcgttagatt |
47678052 |
T |
|
| Q |
118 |
ggagnnnnnnnnnnnnnnnnnnnccttataaaattatggtgttggatatcttcttagacgttaaaagtccattatataattaactttccaataagtattg |
217 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
47678053 |
ggagaaaaaaatgaaaacaaaaaccttataaaattatggtgttggatatcttcttagacgttaaaagtccattatattattaacttttcaataagtattg |
47678152 |
T |
|
| Q |
218 |
ttttatatttaacgataactaat |
240 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
47678153 |
gtttatatttaacgataactaat |
47678175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University