View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9349_high_25 (Length: 227)
Name: NF9349_high_25
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_high_25 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 47678647 - 47678423
Alignment:
| Q |
1 |
gtgaagaccataatacatagccttttttagcatttgttagtttgcaagttacagcagaggtgagtgagtccacatacacatatgtctgagtctgagacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47678647 |
gtgaagaccataatacatagccttttttagcatttgttagtttgcaagttacagcagaggtgagtgagtccacataca--tatgtctgagtctgagacca |
47678550 |
T |
|
| Q |
101 |
caacagttctttgccttgccttaaatgactttgcaataatgtgcggtactatagttttttggctcacttctgtgttttaccatgtgacctggtgggggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47678549 |
caacagttctttgccttgccttaaatgactttgcaataatgtgcggtactatagttttttggctcacttctgtgttttaccatgtgacctggtgggggaa |
47678450 |
T |
|
| Q |
201 |
atgccccccaaatttttgacactttct |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
47678449 |
atgccccccaaatttttgacactttct |
47678423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University