View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_10 (Length: 473)
Name: NF9349_low_10
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 255 - 457
Target Start/End: Complemental strand, 38052670 - 38052468
Alignment:
| Q |
255 |
ttggctttcaacttctgaagcgtggtgaacttatatattcgtttagtggtnnnnnnnnttgaggtaccggattgaagagattgaatgctttttgtatata |
354 |
Q |
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| T |
38052670 |
ttggctttcaacttctcaagcgtggtgaacttatatattcgtttagtggtaaaaaaaattgaggtaccggattgaagagattgaatattttttgtatata |
38052571 |
T |
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| Q |
355 |
cttgtgtcatgtccaaataagttatctagatgtctcttaacgattcttaatgtccaaataagctctctagataactcttaatgacatgtttgatccatga |
454 |
Q |
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| T |
38052570 |
cttgtgtcatgtccaaataagttctctagatgtctcttaacgactcttaatgtccaaatacgctctctagataactcttaatgacatgtttgatcaatga |
38052471 |
T |
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| Q |
455 |
tga |
457 |
Q |
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||| |
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| T |
38052470 |
tga |
38052468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 38053186 - 38053046
Alignment:
| Q |
14 |
agagtggacggaaatataattcaacaaaccaaattaattcgttaggtcgtttgattagtattcgtaatatcaatcattttccatattataaataacattc |
113 |
Q |
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||||||| ||||||||||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38053186 |
agagtggtcggaaatataattcaacgaatcaaattaatttgttagatcgtttgattagtattcgtaatatcaatcattttccatattataagtaacattc |
38053087 |
T |
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| Q |
114 |
ctaacatgtctaattaatgcaaagtttaacatagaataaag |
154 |
Q |
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| T |
38053086 |
ctaacatgtctaattaatgcaaagtttaacatagaataaag |
38053046 |
T |
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