View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9349_low_11 (Length: 455)

Name: NF9349_low_11
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9349_low_11
NF9349_low_11
[»] chr6 (8 HSPs)
chr6 (12-433)||(6920902-6921321)
chr6 (92-435)||(6942589-6942940)
chr6 (93-435)||(6954147-6954492)
chr6 (174-400)||(6934945-6935171)
chr6 (126-370)||(6947493-6947740)
chr6 (175-329)||(20770823-20770982)
chr6 (191-336)||(17369851-17369996)
chr6 (90-130)||(17370022-17370062)
[»] chr7 (12 HSPs)
chr7 (126-400)||(1985617-1985893)
chr7 (196-385)||(15571632-15571821)
chr7 (175-334)||(14076842-14077001)
chr7 (175-334)||(14386870-14387029)
chr7 (208-385)||(13416657-13416834)
chr7 (113-257)||(18514468-18514618)
chr7 (176-248)||(22064356-22064428)
chr7 (181-248)||(19350803-19350870)
chr7 (184-258)||(19597401-19597475)
chr7 (210-248)||(22524940-22524978)
chr7 (35-79)||(15571409-15571453)
chr7 (176-248)||(18982666-18982738)
[»] scaffold0354 (1 HSPs)
scaffold0354 (100-385)||(7607-7887)
[»] chr5 (1 HSPs)
chr5 (187-346)||(18964561-18964720)
[»] chr4 (5 HSPs)
chr4 (175-248)||(53775101-53775174)
chr4 (210-248)||(2911335-2911373)
chr4 (178-248)||(11970722-11970792)
chr4 (91-152)||(53775166-53775226)
chr4 (177-245)||(11981422-11981490)
[»] chr2 (4 HSPs)
chr2 (183-329)||(14515067-14515217)
chr2 (188-248)||(18908517-18908577)
chr2 (188-248)||(18913265-18913325)
chr2 (181-248)||(20712266-20712331)
[»] scaffold0097 (1 HSPs)
scaffold0097 (181-248)||(16105-16170)
[»] chr8 (1 HSPs)
chr8 (184-248)||(27618727-27618791)


Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 12 - 433
Target Start/End: Original strand, 6920902 - 6921321
Alignment:
Q  12 caaagggtgcattctatcaatggacacataaaaactcaaaattagaacagtaaataaaattgagaaaattcacagttaataaaacagataatcattcaac 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6920902 caaagggtgcattctatcaatggacacataaaaactcaaaattagaacagtaaataaaatcgagaaaattcacagttaataaaacagataatcattcaac 6921001  T
Q  112 aatataatcaaatcaaaaccatgatatgaaattatcacaaaatacattgtaccatacacaagctaacacaaattcaaacaagtaaatcatcgaacaaaaa 211  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921002 aatataatcaaatcaaaaccatgatat--aattatcacaaaatacattgtaccatacacaagctaacacaaattcaaacaagtaaatcatcgaacaaaaa 6921099  T
Q  212 cttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtactttcaattatctttgctctattatcttt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6921100 cttactttcaagaagtcgataccaagctttcaacatatcccttggcagtgaaccacaaaattttattggtactttcaattatctttgctctattatcttt 6921199  T
Q  312 ccaattatagagaattgcctggtctggtatattgatagcaaatatcaatgtatcaccattctcagaaaaacacattggtgtcaatcgagagcgatgaaat 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6921200 ccaattatagagaattgcctggtctggtatattgatagcaaatatcaatgtatcaccattctcggaaaaacacattggtgtcaatcgagagcgatgaaat 6921299  T
Q  412 aatgaatcattatataactcct 433  Q
    ||||||||||||||||||||||    
T  6921300 aatgaatcattatataactcct 6921321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 92 - 435
Target Start/End: Original strand, 6942589 - 6942940
Alignment:
Q  92 aaaacagataatcattcaacaatataatcaaatcaaaaccatgatatg-aaattatcacaaaatacattgtaccatacacaagctaacacaaattcaaac 190  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||     
T  6942589 aaaacagataatcattcaacaatatattaaaatcaaaaccatgatatggaaataatcacaaaatacattctaccatacacaagctaacacaaattcaaaa 6942688  T
Q  191 -------aagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtac 283  Q
           | | |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6942689 ccatgatatggaaataatcaaacaaaaacttactttcaagaagttgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtac 6942788  T
Q  284 tttcaattatctttgctctattatctttccaattatagagaattgcctggtctggtatattgatagcaaatatcaatgtatcaccattctcagaaaaaca 383  Q
    ||| |||| |||||||||||||||||||| |||||||||||||||| |||||| ||| |||||| |||||||||||||||||||||||||||||||||||    
T  6942789 ttttaattctctttgctctattatctttcaaattatagagaattgcttggtctagtaaattgattgcaaatatcaatgtatcaccattctcagaaaaaca 6942888  T
Q  384 cattggtgtcaatcgagagcgatgaaataatgaatcattatataactcctga 435  Q
    || |||  |||||| |   |||| |||||||||||||||||| |||||||||    
T  6942889 caatggcctcaatccaagacgataaaataatgaatcattatagaactcctga 6942940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 93 - 435
Target Start/End: Original strand, 6954147 - 6954492
Alignment:
Q  93 aaacagataatcattcaa-caatataatcaaatcaaaaccatgatatgaaatta-tcacaaaatacattgtaccatacacaagctaacacaaattcaaac 190  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||||||    
T  6954147 aaacagataatcattcaaacaatataatcaaatcaaaaccatggtatgaaaataatcacaaaatacattgtaccatagacaagctaacacaaattcaaac 6954246  T
Q  191 aagtaaatcatcg-aacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtactttcaa 289  Q
    ||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  6954247 aagtaaatcatcggaaaaaaaacatactttcaagaagtcgataccaagctttcaacatatcccttggcagcggaccaccaaattttattggtacttttaa 6954346  T
Q  290 ttatctttgctctattatctttccaattatagagaattgcctggtctggtatattgatagcaaatatcaatgtatcaccattctcagaaaaacacattgg 389  Q
    || || |||||||||||| |||  |||||||||||||||| |||||| ||| |||||| |||||||||||||||||||||| || ||||||||||| |||    
T  6954347 ttctcgttgctctattattttttaaattatagagaattgcttggtctagtaaattgattgcaaatatcaatgtatcaccatccttagaaaaacacagtgg 6954446  T
Q  390 tgtcaatcgagagcgatgaaataatgaatcattatataactcctga 435  Q
      |||||||||  | | ||||||||||||| ||||  |||||||||    
T  6954447 catcaatcgaggacaaagaaataatgaatcgttattgaactcctga 6954492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 174 - 400
Target Start/End: Original strand, 6934945 - 6935171
Alignment:
Q  174 ctaacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaatt 273  Q
    |||||||||||||||||||||||||||| ||| | ||| |||| ||||||||||||||||||| ||||||||||||||||||||| || ||||| || ||    
T  6934945 ctaacacaaattcaaacaagtaaatcattgaagagaaaattaccttcaagaagtcgataccaaactttcaacatatcccttggcactgaaccacaaattt 6935044  T
Q  274 ttattggtactttcaattatctttgctctattatctttccaattatagagaattgcctggtctggtatattgatagcaaatatcaatgtatcaccattct 373  Q
    |||  | |||||| |||| |||||||| |||||||| ||||||||||||||| ||| |||||||||| |||||| ||||||||||||||||||||||| |    
T  6935045 ttaccgttacttttaattctctttgctgtattatctctccaattatagagaaatgcttggtctggtagattgattgcaaatatcaatgtatcaccattat 6935144  T
Q  374 cagaaaaacacattggtgtcaatcgag 400  Q
     |||||| |||| |||  |||||||||    
T  6935145 tagaaaagcacaatggaatcaatcgag 6935171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 126 - 370
Target Start/End: Original strand, 6947493 - 6947740
Alignment:
Q  126 aaaaccatgatatgaaatta-tcacaaaatacattgtac--catacacaagctaacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaa 222  Q
    ||||||||||| ||||| || ||||| |||| |||||||  |||||| || ||||| ||||| ||||||||||||||||| || | |||||||| |||||    
T  6947493 aaaaccatgatttgaaaataatcacacaatatattgtacatcatacataaactaactcaaatacaaacaagtaaatcatccaagagaaacttaccttcaa 6947592  T
Q  223 gaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtactttcaattatctttgctctattatctttccaattataga 322  Q
     |  ||||| ||||||||||||||||||| |||||| || ||||| ||||||| |||||||||| |||| ||||| ||||||||||| ||||||||||||    
T  6947593 aatatcgatgccaagctttcaacatatccattggcactgaaccacaaaattttgttggtacttttaattctctttactctattatctctccaattataga 6947692  T
Q  323 gaattgcctggtctggtatattgatagcaaatatcaatgtatcaccat 370  Q
    ||| ||| |||||||||| | |||| | ||||||||||||||||||||    
T  6947693 gaaatgcttggtctggtagagtgattgtaaatatcaatgtatcaccat 6947740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 175 - 329
Target Start/End: Complemental strand, 20770982 - 20770823
Alignment:
Q  175 taacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagc-----tttcaacatatcccttggcagtggaccacca 269  Q
    ||||||||||||||||||||||||||||||| |  ||||||||||||| | ||||||||||| |     ||||||||||  |||| ||| |  |||||||    
T  20770982 taacacaaattcaaacaagtaaatcatcgaagaggaacttactttcaacaggtcgataccaaaccaaactttcaacataatccttagcactataccacca 20770883  T
Q  270 aattttattggtactttcaattatctttgctctattatctttccaattatagagaattgc 329  Q
    ||||| || ||||||||||||| |||||  ||||||||||||| |||||||||| |||||    
T  20770882 aatttcataggtactttcaattctctttagtctattatctttcaaattatagaggattgc 20770823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 191 - 336
Target Start/End: Complemental strand, 17369996 - 17369851
Alignment:
Q  191 aagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtactttcaat 290  Q
    ||||||||||||||| |  ||||||||||||| |||| |||||||||||||||||||| ||||||| ||    |||   |||| ||| |||| |||||||    
T  17369996 aagtaaatcatcgaagagtaacttactttcaacaagtagataccaagctttcaacatagcccttggaagccttccaaataattctataggtattttcaat 17369897  T
Q  291 tatctttgctctattatctttccaattatagagaattgcctggtct 336  Q
    | ||||| ||||||||| | ||||||||||||||||| | ||||||    
T  17369896 tttctttactctattatttctccaattatagagaatttcttggtct 17369851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 17370062 - 17370022
Alignment:
Q  90 ataaaacagataatcattcaacaatataatcaaatcaaaac 130  Q
    |||||| ||||||||||||||||||  ||||||||||||||    
T  17370062 ataaaatagataatcattcaacaatgcaatcaaatcaaaac 17370022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 126 - 400
Target Start/End: Original strand, 1985617 - 1985893
Alignment:
Q  126 aaaaccatgatatgaaatta-tcacaaaatacattgtac-catacacaagctaacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaag 223  Q
    ||||||||||| ||||| || ||||| |||| ||||||  ||||||||| |||||||||||||||||||||||||||||||| | |||||||| ||||||    
T  1985617 aaaaccatgatttgaaaataatcacacaatatattgtatacatacacaaactaacacaaattcaaacaagtaaatcatcgaagagaaacttaccttcaag 1985716  T
Q  224 aagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtactttcaattatctttgctctattatctttccaattatagag 323  Q
    || ||||||||||||||||||| |||||||||||| || ||||| ||||| |||||||||||| |||| | | | ||||||||||| ||| |||||||||    
T  1985717 aaatcgataccaagctttcaacgtatcccttggcactgaaccacaaaattctattggtacttttaattctttctactctattatctctcctattatagag 1985816  T
Q  324 aattgcctggtctggtatattgatagcaaatatcaatgtatcaccattctcagaaaaacacattggtgtcaatcgag 400  Q
    || ||| ||||||| |  |||||| |||||||||||||||||||||||||| |||||| ||| ||| ||||||||||    
T  1985817 aaatgcttggtctgttggattgattgcaaatatcaatgtatcaccattctcggaaaaatacaatggagtcaatcgag 1985893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 196 - 385
Target Start/End: Original strand, 15571632 - 15571821
Alignment:
Q  196 aatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtactttcaattatct 295  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| |  ||||| ||| |||||| |||| |||    
T  15571632 aatcatcgaacaaaaacttactttcaggaagtcgataccaagctttcaacatatcccctggcattggaccaacggatttttttgttacttttaattctct 15571731  T
Q  296 ttgctctattatctttccaattatagagaattgcctggtctggtatattgatagcaaatatcaatgtatcaccattctcagaaaaacaca 385  Q
    || ||||||||| | |||||||||| | |||| | ||||||     |||||| ||||||||||  |||||||| |||||||||| |||||    
T  15571732 ttactctattatatctccaattataaacaattacttggtctctacgattgattgcaaatatcacagtatcaccgttctcagaaacacaca 15571821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 175 - 334
Target Start/End: Complemental strand, 14077001 - 14076842
Alignment:
Q  175 taacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattt 274  Q
    ||||||| ||||||||| ||||||||||||| |  ||||||||||| | |||||||||||||||||||||||||   ||||| |    ||||| |||||     
T  14077001 taacacagattcaaacatgtaaatcatcgaagaggaacttactttctaaaagtcgataccaagctttcaacataattcttggaatgcaaccacaaaattc 14076902  T
Q  275 tattggtactttcaattatctttgctctattatctttccaattatagagaattgcctggt 334  Q
    |||||||| ||| |||| ||||| ||||||||||| |||||||||||| |||||| ||||    
T  14076901 tattggtatttttaattctctttactctattatctctccaattatagataattgcttggt 14076842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 175 - 334
Target Start/End: Complemental strand, 14387029 - 14386870
Alignment:
Q  175 taacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattt 274  Q
    ||||||| ||||||||| ||||||||||||| |  ||||||||||| | |||||||||||||||||||||||||   ||||| |    ||||| |||||     
T  14387029 taacacagattcaaacatgtaaatcatcgaagaggaacttactttctaaaagtcgataccaagctttcaacataattcttggaatgcaaccacaaaattc 14386930  T
Q  275 tattggtactttcaattatctttgctctattatctttccaattatagagaattgcctggt 334  Q
    |||||||| ||| |||| ||||| ||||||||||| |||||||||||| |||||| ||||    
T  14386929 tattggtatttttaattctctttactctattatctctccaattatagataattgcttggt 14386870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 208 - 385
Target Start/End: Original strand, 13416657 - 13416834
Alignment:
Q  208 aaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtactttcaattatctttgctctattat 307  Q
    ||||| |||||||  |||||||||||||||||||||||||||||||||||   | |||||||||||| ||||| ||||| |||| ||||| |||||||||    
T  13416657 aaaacatactttcttgaagtcgataccaagctttcaacatatcccttggcgtcgaaccaccaaatttgattgggacttttaattctctttactctattat 13416756  T
Q  308 ctttccaattatagagaattgcctggtctggtatattgatagcaaatatcaatgtatcaccattctcagaaaaacaca 385  Q
    || ||| ||| ||| ||||| | |||||| |   |||||| ||||||||||   ||||||| ||| |||||| |||||    
T  13416757 ctctcctattgtagtgaattacttggtctagacgattgattgcaaatatcaccatatcaccgttcccagaaacacaca 13416834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 257
Target Start/End: Original strand, 18514468 - 18514618
Alignment:
Q  113 atataatcaaatcaaaaccatgatatg-aaattatcacaaaatacattgtac-catacacaagctaacacaaattcaaacaagtaaatcatcgaacaaaa 210  Q
    ||||||||||||||||||||||||||| |||| || |||  ||||||||||| |  |||| |  |||| |||||||||||||||||||||  |||||       
T  18514468 atataatcaaatcaaaaccatgatatgaaaataatgacacgatacattgtacacggacacgatttaactcaaattcaaacaagtaaatcacggaacaggg 18514567  T
Q  211 acttactttcaagaagtc----gataccaagctttcaacatatcccttggc 257  Q
    |||||||||| | |||||    |||| |||||| ||||||||| |||||||    
T  18514568 acttactttccacaagtctgtagatatcaagctctcaacatatgccttggc 18514618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 22064428 - 22064356
Alignment:
Q  176 aacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 248  Q
    |||||||||||||||||||||||| ||| | | |||||||||||||| ||  ||| ||||| |||||| ||||    
T  22064428 aacacaaattcaaacaagtaaatcgtcgtaaagaaacttactttcaacaatacgaaaccaacctttcatcata 22064356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 19350803 - 19350870
Alignment:
Q  181 aaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 248  Q
    |||||||||||| ||||||||  || | |||||||||||||||| || || || ||||||||||||||    
T  19350803 aaattcaaacaattaaatcattaaagagaaacttactttcaagaggttgaaactaagctttcaacata 19350870  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 19597401 - 19597475
Alignment:
Q  184 ttcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggca 258  Q
    |||||||||||||||  | ||| | ||||||||||| ||  |||||| |||||||||||||||||| | ||||||    
T  19597401 ttcaaacaagtaaattgttgaaaagaaacttacttttaattagtcgaaaccaagctttcaacatattcattggca 19597475  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 22524940 - 22524978
Alignment:
Q  210 aacttactttcaagaagtcgataccaagctttcaacata 248  Q
    |||||||||||||||||| || |||||||||||||||||    
T  22524940 aacttactttcaagaagttgaaaccaagctttcaacata 22524978  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 15571409 - 15571453
Alignment:
Q  35 acacataaaaactcaaaattagaacagtaaataaaattgagaaaa 79  Q
    |||| ||||| |||||||||| |||||||||||||||||| ||||    
T  15571409 acacttaaaagctcaaaattaaaacagtaaataaaattgaaaaaa 15571453  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 18982666 - 18982738
Alignment:
Q  176 aacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 248  Q
    |||| |||||||| |||||||||  | ||| | ||| ||||||||||  |||||| |||||||||||||||||    
T  18982666 aacaaaaattcaatcaagtaaatagttgaaaagaaatttactttcaactagtcgaaaccaagctttcaacata 18982738  T

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Target: scaffold0354 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 100 - 385
Target Start/End: Complemental strand, 7887 - 7607
Alignment:
Q  100 taatcattcaacaatataatcaaatcaaaaccatgatatgaaatta-tcacaaaatacattgtaccatacacaagctaacacaaattcaaacaagtaaat 198  Q
    ||||| || ||||||||||||||||||||||||| |||||||| || ||||| || ||| |||||     |||| |||||| ||||||||||||||||||    
T  7887 taatcgttgaacaatataatcaaatcaaaaccataatatgaaaataatcacacaagacaatgtac-----acaaactaacaaaaattcaaacaagtaaat 7793  T
Q  199 catcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtactttcaattatctttg 298  Q
     ||||| ||||| | ||| |||||||||||| |||||||||||| ||||||||||||||| || |||||  ||||| ||||||||||| |||| | |||     
T  7792 gatcgagcaaaa-cataccttcaagaagtcggtaccaagctttctacatatcccttggcattgaaccacggaatttgattggtacttttaattctattta 7694  T
Q  299 ctctattatctttccaattatagagaattgcctggtctggtat-attgatagcaaatatcaatgtatcaccattctcagaaaaacaca 385  Q
    ||||||||||| || ||||||||| ||||||  ||||| |||| |||| | |||||||||||||||||||||||||| |||| |||||    
T  7693 ctctattatctctcaaattatagacaattgctaggtct-gtatgattggttgcaaatatcaatgtatcaccattctcggaaacacaca 7607  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 346
Target Start/End: Original strand, 18964561 - 18964720
Alignment:
Q  187 aaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtacttt 286  Q
    |||||||||| ||||| || |  ||||||||||||| |||| |||| ||||||||||||||| ||||||| ||    |||  |  |||||   ||| |||    
T  18964561 aaacaagtaagtcatcaaagaggaacttactttcaacaagtagatatcaagctttcaacatagcccttggaagccttccaaaattttttacatgtatttt 18964660  T
Q  287 caattatctttgctctattatctttccaattatagagaattgcctggtctggtatattga 346  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||| ||||||  ||||||||    
T  18964661 caattttctttactctattatctctccaattatagagaattgcttggtctcttatattga 18964720  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 53775174 - 53775101
Alignment:
Q  175 taacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 248  Q
    ||||||||||||||||||||||||| | ||| |  ||||||||||||| | || ||||||||||||||||||||    
T  53775174 taacacaaattcaaacaagtaaatcttggaagaggaacttactttcaacacgttgataccaagctttcaacata 53775101  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 2911373 - 2911335
Alignment:
Q  210 aacttactttcaagaagtcgataccaagctttcaacata 248  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  2911373 aacttactttcaagaagttgataccaagctttctacata 2911335  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 11970722 - 11970792
Alignment:
Q  178 cacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 248  Q
    |||||||||||||||||||||  ||| | | |||||||||||||| ||  | | |||||||||||||||||    
T  11970722 cacaaattcaaacaagtaaattgtcgtagagaaacttactttcaacaatacaaaaccaagctttcaacata 11970792  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 53775226 - 53775166
Alignment:
Q  91 taaaacagataatcattcaacaatataatcaaatcaaaaccatgatatgaaattatcacaaa 152  Q
    ||||| ||| ||||||||||||||| |||||||||||||| || |||| |||||| ||||||    
T  53775226 taaaagagagaatcattcaacaatacaatcaaatcaaaactatcatat-aaattaacacaaa 53775166  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 11981422 - 11981490
Alignment:
Q  177 acacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaac 245  Q
    ||||||||||||||||||||||  | | | | |||||||||||||| ||  ||| ||||||||||||||    
T  11981422 acacaaattcaaacaagtaaattgttgtagagaaacttactttcaacaatacgaaaccaagctttcaac 11981490  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 329
Target Start/End: Complemental strand, 14515217 - 14515067
Alignment:
Q  183 attcaaacaagtaaatcatcgaacaaaaacttactttcaagaa----gtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttatt 278  Q
    ||||||||||||||||||| |||||  |||||||||| || ||    ||||||| ||| |||||||||||| |||||||  ||  |||   |||| ||||    
T  14515217 attcaaacaagtaaatcattgaacaggaacttacttttaacaagtctgtcgatatcaaactttcaacatatgccttggccctgctccatgtaattctatt 14515118  T
Q  279 ggtactttcaattatctttgctctattatctttccaattatagagaattgc 329  Q
    ||| ||||  ||| ||||| ||||||||||||||||||| || ||||||||    
T  14515117 ggtgcttttgattctctttactctattatctttccaattgtaaagaattgc 14515067  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 18908517 - 18908577
Alignment:
Q  188 aacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 248  Q
    ||||| |||||||||||| |||||||||||||||||| || || |||||||||||||||||    
T  18908517 aacaattaaatcatcgaagaaaaacttactttcaagaggttgaaaccaagctttcaacata 18908577  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 18913265 - 18913325
Alignment:
Q  188 aacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 248  Q
    ||||| |||||||| ||| | |||||||||||||||| || ||||||||||||||||||||    
T  18913265 aacaattaaatcattgaagagaaacttactttcaagaggttgataccaagctttcaacata 18913325  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 20712266 - 20712331
Alignment:
Q  181 aaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 248  Q
    |||||||||||||||||||||  || |  ||||||||||||| |||| || ||||||||||| |||||    
T  20712266 aaattcaaacaagtaaatcat--aagaggaacttactttcaacaagttgaaaccaagctttcgacata 20712331  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 16105 - 16170
Alignment:
Q  181 aaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 248  Q
    |||||||||||||||||||||  || |  ||||||||||||| |||| || ||||||||||| |||||    
T  16105 aaattcaaacaagtaaatcat--aagaggaacttactttcaacaagttgaaaccaagctttcgacata 16170  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 27618791 - 27618727
Alignment:
Q  184 ttcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 248  Q
    ||||||||||||| || || || |  |||||||||||||||| | || |||||||||||||||||    
T  27618791 ttcaaacaagtaattcgtcaaataggaacttactttcaagaaattgaaaccaagctttcaacata 27618727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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