View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_12 (Length: 451)
Name: NF9349_low_12
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 3698955 - 3698680
Alignment:
| Q |
17 |
attctactgttactattctcttcattg----taacaaccatatttcaaactatagcaaactaacaaggataatgagttatttaccccttggtgtccatct |
112 |
Q |
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| T |
3698955 |
attctactgttactattctcttcattgctggtaacaaccgtattgtaaactatagcaaactaacaaggataatgagttatttaccccttggtgtccatct |
3698856 |
T |
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| Q |
113 |
caataaggttcatgttctgcagctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctgacttcc |
212 |
Q |
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| T |
3698855 |
caataaggttcatgttctgcaactgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctgacttcc |
3698756 |
T |
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| Q |
213 |
accataaatcctctggaatgcaccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctgcggca |
288 |
Q |
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| T |
3698755 |
accataaatcctctggaatgcaccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctgcggca |
3698680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 135 - 284
Target Start/End: Complemental strand, 3703777 - 3703628
Alignment:
| Q |
135 |
ctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctgacttccaccataaatcctctggaatgca |
234 |
Q |
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| T |
3703777 |
ctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctggcttccaccataaatcctctggaatgca |
3703678 |
T |
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| Q |
235 |
ccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctgc |
284 |
Q |
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| T |
3703677 |
ccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctgc |
3703628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 333 - 436
Target Start/End: Complemental strand, 3703578 - 3703479
Alignment:
| Q |
333 |
gttcctcagaagttttgacaaatcactcatacacaaaaaagaaactcaccagctctgacatagtccacatcaaacgtatagtaattgggtttctttgtct |
432 |
Q |
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|||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3703578 |
gttcctcagaagttttgacaaatctctcaaacacaa----gaaactcaccagctctgacatagtccacatcaaacgtatagtaattgagtttctttgtct |
3703483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 396
Target Start/End: Complemental strand, 3698631 - 3698574
Alignment:
| Q |
337 |
ctcagaagttttgacaaatcactcatacacaaaaaagaaactcaccagctctgacatagt |
396 |
Q |
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| T |
3698631 |
ctcaaaagttttgacaaatcactcaaacacaaaa--gaaactcaccagctctgacatagt |
3698574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 3706928 - 3706871
Alignment:
| Q |
103 |
gtgtccatctcaataaggttcatgttctgcagctgttgaagaatgtggcgagcaatgg |
160 |
Q |
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| T |
3706928 |
gtgtccatttcaatgatgtccatgttctgcaactgttggagaatgtgacgagcaatgg |
3706871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 94 - 283
Target Start/End: Original strand, 15179378 - 15179567
Alignment:
| Q |
94 |
taccccttggtgtccatctcaataaggttcatgttctgcagctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgac |
193 |
Q |
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||||||||||| |||||||| || ||||||||||||| || ||||||||||||||| |||||||| | ||||||||||||||||||||| || || |||| |
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| T |
15179378 |
taccccttggtatccatctcgatgaggttcatgttctccaactgttgaagaatgtgacgagcaatagcaccactgctcttgcagaaatggggaggacgac |
15179477 |
T |
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| Q |
194 |
tgccattcctctgacttccaccataaatcctctggaatgcaccaacaccgagtccacccctcaagtagatcttccttgcaatggaagctg |
283 |
Q |
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| T |
15179478 |
ttccattcctctgactcccaccgtaaatcctctggaatgaaccaacaccaagaccgcctcttacgtagattttccttgccatggaagctg |
15179567 |
T |
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