View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_14 (Length: 438)
Name: NF9349_low_14
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 32182573 - 32182952
Alignment:
| Q |
1 |
gtgagggtttgttttcataatgaattattaaaggccctttctatcatgagaatattgatacttgcttatcnnnnnnnnnnnnnnggttatgtgttatcct |
100 |
Q |
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| T |
32182573 |
gtgagggtttgttttcataatgaattattaaaggccctttctatcatgagaatattgatacttgcttatcaaaaaacaaaaaaaggttatgtgttatcct |
32182672 |
T |
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| Q |
101 |
tgtaacgcaaaagaaatttccccctgaataaatatgatgatgtatatctttcataaaaaggaaaaagaatataatgtataaaattcttttgatgcaatga |
200 |
Q |
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| T |
32182673 |
tgtaacgcaaaagaaatttccccctgaataaatatgatgatgtatatctttcataaaaaggaaaaagaatataatgtataaaattcttttgatgcaatga |
32182772 |
T |
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| Q |
201 |
tgtatcaaaatcaataagcaaagaaaaagatgcacacctattttacatcgttttagattaaaggatgtttcatttgtgccattcttaatgttcctccttc |
300 |
Q |
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| T |
32182773 |
tgtatcaaaatcaataagcaaagaaaaagatgcacacctattttacatcgttttagattaaaggatgtttc---tgggccattcttaatgttccttcttc |
32182869 |
T |
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| Q |
301 |
ccatatgcgtctttttcttcgtattgttgttatagagagtaggactcctcctataattccggatagagatttcctgctgttta |
383 |
Q |
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| T |
32182870 |
ccatatgcgtctttttcttcgtattgttgttatagagagtaggactcctcctataataccggatagggatttcctgctgttta |
32182952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 374 - 424
Target Start/End: Original strand, 32183023 - 32183073
Alignment:
| Q |
374 |
ctgctgtttaatctgaaccatcctttctgatatcaacagccagaatttatt |
424 |
Q |
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| T |
32183023 |
ctgctgtttaatctgaaccgtcctttctgatatcaaaagccagaatttatt |
32183073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 33569548 - 33569588
Alignment:
| Q |
279 |
ccattcttaatgttcctccttcccatatgcgtctttttctt |
319 |
Q |
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| T |
33569548 |
ccattcttaacgtttctccttcccatatgcgtcttcttctt |
33569588 |
T |
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