View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_18 (Length: 427)
Name: NF9349_low_18
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 193 - 406
Target Start/End: Original strand, 49542656 - 49542867
Alignment:
| Q |
193 |
gccagccagaagtgctcacccggtgatggcgtcacactgccttctcttgtcactgttttttactctcaattctctctgctaactggtaatttcaccttct |
292 |
Q |
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| T |
49542656 |
gccagccagaagtgctcacgcggtgatggcgtcacactgccttctcttgtcactgttttttactc--aattctctctgctaactggtaatttcaccttct |
49542753 |
T |
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| Q |
293 |
tcttcttcttcggttgcacattaactgtttgattcaatgaatgaacacgttcttcttgctattcaaggtttatctatgtactttgttttgacctttttca |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49542754 |
tcttcttcttcggttgcacattaactgtttgattcaatgaatgaacacgttcttcttgcttttcaaggtttatctatgtactttgttttgacctttttca |
49542853 |
T |
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| Q |
393 |
caacttgctgctat |
406 |
Q |
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||| |||||||||| |
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| T |
49542854 |
caatttgctgctat |
49542867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 49542441 - 49542615
Alignment:
| Q |
20 |
aggacaaaggaaatgagcaatatggaacgaatatctagctgtgagtcttgttcggattcggcggccatggcaagggg----agatgaaattgcagtgagg |
115 |
Q |
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| T |
49542441 |
aggagaaaggaaatgagcaatatggaacgaatatctagctgtgagtcttgttcggattcggcggccatggcaagggggagatgatgaaattgcaatgagg |
49542540 |
T |
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| Q |
116 |
accacatgccacattatattatgactggctatttcatgtacaatagttaaaattataaatcaccgatttctcctcatgcc |
195 |
Q |
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| T |
49542541 |
accacatgccac-----actatgactggctatttcatgtacaatagttaaaattataaatcaccaatttctcctcatgcc |
49542615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 248 - 419
Target Start/End: Original strand, 47608047 - 47608215
Alignment:
| Q |
248 |
ttttttactctcaattctctctgctaactggtaatttcaccttcttcttcttcttcggttgcacattaactgtttgattcaatgaatgaacacgttcttc |
347 |
Q |
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| T |
47608047 |
tttttttcgctcaattctctatgctaaatggtaatttcaccttc---ttcttcttccgttgcacattaactatttgattcaacgaattaacacgttcttc |
47608143 |
T |
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| Q |
348 |
ttgctattcaaggtttatctatgtactttgttttgacctttttcacaacttgctgctatagacttctctgct |
419 |
Q |
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| T |
47608144 |
ttgcttttcaaggtttatctatgtactttgttctcacctttttcacaacctgctgctacagatttctctgct |
47608215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 40918654 - 40918717
Alignment:
| Q |
20 |
aggacaaaggaaatgagcaatatggaacgaatatctagctgtgagtcttgttcggattcggcggc |
84 |
Q |
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| T |
40918654 |
aggagaaaggaaaagagcaatatggaacgaatatctagccgtgag-cttgttcggattgggcggc |
40918717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 52894426 - 52894385
Alignment:
| Q |
294 |
cttcttcttcggttgcacattaactgtttgattcaatgaatg |
335 |
Q |
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| T |
52894426 |
cttcttcttcggttgcacataaactgtttgattaaatgaatg |
52894385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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