View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_19 (Length: 418)
Name: NF9349_low_19
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 50501140 - 50501536
Alignment:
| Q |
18 |
gaagttgcgtcggtccaaccaattttttctcgttcagcactgcattcaccactccaaggactttcctcacttcattagcaagttctattaccaagtcgtc |
117 |
Q |
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| T |
50501140 |
gaagttgcgtcggtccaaccaattttttctcgttcagcactacattcaccactccaaggactttcctcacttcattagcaagttctattaccaagtcgtc |
50501239 |
T |
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| Q |
118 |
ctcatgacctgtgcaagcaagagctctcaacttatcatctcataaaattgaagtgtataatagcaagaaggtgcttgcaaattttaaatgtgatcatgta |
217 |
Q |
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| T |
50501240 |
ctcatgacctgtgcaagcaagagctctcaacttatcatctcataaaattgaagtgtataatagcaagaaggtgcttgcaaattttaaatgtgatcatgta |
50501339 |
T |
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| Q |
218 |
ggagctataatgaatgtacgtaccaagattatgcatagccttttctagaagaaaaagatagtccctgttgttaccgcatgggccattggcggttgctatt |
317 |
Q |
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| T |
50501340 |
ggagctataatgaatgtacgtaccaagattatgcatagccttttctagaagaaaaagatagtccctgttgttaccgcatgggccattggcggttgctatt |
50501439 |
T |
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| Q |
318 |
tgcctgaatgaataagcacagtaagtggaatacatggttaggccaaaattttgacataaaaaaggggggaaagtagtgtacaatagtataatctacc |
414 |
Q |
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| T |
50501440 |
tgcctgaatgaataagcacagtaagtggaatacatggttaggccaaaattttgacataaaaaaggggggaaagtagtgtacaataatataatatacc |
50501536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 1201510 - 1201462
Alignment:
| Q |
80 |
ttcctcacttcattagcaagttctattaccaagtcgtcctcatgacctg |
128 |
Q |
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| T |
1201510 |
ttcctcacttcattggcaagttctatcaccatgtcatcctcatgtcctg |
1201462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 1224381 - 1224429
Alignment:
| Q |
80 |
ttcctcacttcattagcaagttctattaccaagtcgtcctcatgacctg |
128 |
Q |
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|||||||||||||| ||||||||||| |||| ||| |||||||| |||| |
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| T |
1224381 |
ttcctcacttcattggcaagttctatcaccatgtcatcctcatgtcctg |
1224429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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