View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_20 (Length: 415)
Name: NF9349_low_20
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 370
Target Start/End: Original strand, 44515324 - 44515692
Alignment:
| Q |
11 |
ttggtgtttggttgaattaaacctgttctagcttgctattgttgctcatgaccannnnnnnnaacaggggtctgttctatttttggtgttgtttcttgtg |
110 |
Q |
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| T |
44515324 |
ttggtgtttagttgaattaaacctgttctagcttgctattgttgcttatgaccattttttttaacaggggtctgttctatttttggtgttgtttcttgtg |
44515423 |
T |
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| Q |
111 |
ttgaaagcgtgatcaattgcgcccttaggcctgaagatccaattgagctttctacacaatacgcagtaaaccgttttgcacgtcaacggttggagggaat |
210 |
Q |
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| T |
44515424 |
ttgaaagcgtgatcaattgcgcccttaggcctgaagatccaattgagctttctacacaatacgtagtaaaccgttttgcacgtcaacggttggagggaat |
44515523 |
T |
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| Q |
211 |
gtgtaaaacgagtgaaggtaatataca---------cattgaggatgtggttggtggctttacttgtgaggaagtacttcgtactataagagataatggc |
301 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
44515524 |
gtgtaaaatgagtgaaggtaatatacacattgagtgcattgaggatgtggttggtggctttacttgcgaggaagtacttcgtactataagagatagtggc |
44515623 |
T |
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| Q |
302 |
attccgactgaaaaggccttcaaatatactggactacctgtggtttcttatgcaaatgagtggaagaca |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44515624 |
attccgactgaaaaggccttcaaatatactggactacctgtggtttcttatgcaaatgagtggaagaca |
44515692 |
T |
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