View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_22 (Length: 402)
Name: NF9349_low_22
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_22 |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 385
Target Start/End: Original strand, 29054182 - 29054537
Alignment:
| Q |
9 |
agaagcagagagcactacagcagaaatggatcaaactgaaaaacaatgaacacaatacaattggatcatctttcatttgcaaaagctggttcaagatcct |
108 |
Q |
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| T |
29054182 |
agaaacagacagcactacagcagaaatggatcaaactgaaaaacaatgaacacagtacaattggatcatctttcatttgcaaaagctggttcaagatcct |
29054281 |
T |
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| Q |
109 |
ctttgattgatcaacttatgtaataatgcaacaagagaggggagcaatctgagctcgagagacatgaacgatctctggaacaaattgagagaataaaata |
208 |
Q |
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| T |
29054282 |
ctttgattgatcaacttatgtaataatgcaacaagagaggggagcaatctgagctcgagagacatgaacgatctctggaacaaattgagagaataaaata |
29054381 |
T |
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| Q |
209 |
catgatctaagagacagttcgtagtgagatgctcaagcaagttagacagaatcgccacgagtcgagcgagtgggttcatacccacgagagagtcacgaac |
308 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
29054382 |
catgatctaagagacagttcg---------------------tagacagaatcgccacgagtcgagcgagtgggttcatacgcacgagagagtcatgaac |
29054460 |
T |
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| Q |
309 |
aatctgatgaaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaata |
385 |
Q |
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| T |
29054461 |
aatctgatgaaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaata |
29054537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 34635308 - 34635375
Alignment:
| Q |
318 |
aaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaata |
385 |
Q |
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| T |
34635308 |
aaatttgagttggaaaggctcagataggatcattgtgaccccttattcccaataatcttagtcaaata |
34635375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 385
Target Start/End: Complemental strand, 4606 - 4539
Alignment:
| Q |
318 |
aaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaata |
385 |
Q |
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| T |
4606 |
aaatttgagttggaaaggctcagataggatcattgtgaccccttattcccaataatcttagtcaaata |
4539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 30032213 - 30032174
Alignment:
| Q |
22 |
actacagcagaaatggatcaaactgaaaaacaatgaacac |
61 |
Q |
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| T |
30032213 |
actacagcagaaatggatcgaactgaaaatcaatgaacac |
30032174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 13792094 - 13792148
Alignment:
| Q |
331 |
acacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaata |
385 |
Q |
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| T |
13792094 |
acacactcagataggatcattgtgacgacttattcccaataatccgagtcaaata |
13792148 |
T |
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