View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_23 (Length: 389)
Name: NF9349_low_23
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 22 - 354
Target Start/End: Complemental strand, 36704844 - 36704512
Alignment:
| Q |
22 |
ccgaattgctgcataaattcttctaagatacatttctatcttgatcatgaaccacatccaacatcgacaaagaacttgatccatttttcgcaaagtaagt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36704844 |
ccgaattgctgcataaattcttctaagatacatttctatcttgatcatgaaccaaatccaacatcgacaaagaacttgatccatttttcgcaaagtaagt |
36704745 |
T |
|
| Q |
122 |
ttactaaaagcaatattttcatttgtgactaacacatgaattgaataatttttcttactggcatggctcttatactatgaaatttgagtagtgatcagaa |
221 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36704744 |
ctactaaaagcaatatttttatttgtgactaacacatgaattgaataatttttcttactgacatggctcttatactatgaaatttgagtagtgatcagaa |
36704645 |
T |
|
| Q |
222 |
caggaaaaatagcaaagtatgattatgttaatgcagcacaaaatatacaacactatggacaaagggttcctccaacatatgacatgacaaaaatctcaag |
321 |
Q |
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| T |
36704644 |
caggaaaaatagcaaagtatgattatgttaatgcagcacaaaatatacaacactatggacaaagggttcctccaacatatgacatgacaaaaatctcaag |
36704545 |
T |
|
| Q |
322 |
tgaattcccactttttcttggctatggagggaa |
354 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
36704544 |
tgaattcccactttttcttggctatggagggaa |
36704512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 188 - 354
Target Start/End: Complemental strand, 36711828 - 36711662
Alignment:
| Q |
188 |
ctcttatactatgaaatttgagtagtgatcagaacaggaaaaatagcaaagtatgattatgttaatgcagcacaaaatatacaacactatggacaaaggg |
287 |
Q |
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||||| || ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||| |
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| T |
36711828 |
ctcttgtattatgaaatttgagtagtgatcagaaaaggacaaatatcaaagtatgattatgttgatgaagcacaaaatttacaacactatggacaaaggg |
36711729 |
T |
|
| Q |
288 |
ttcctccaacatatgacatgacaaaaatctcaagtgaattcccactttttcttggctatggagggaa |
354 |
Q |
| |
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|||||||||| |||||| |||| |||||| | ||||||||||| |||||||| ||||||||||||| |
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| T |
36711728 |
ttcctccaacttatgacgtgaccaaaatccctagtgaattccccctttttctcagctatggagggaa |
36711662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 36712355 - 36712259
Alignment:
| Q |
25 |
aattgctgcataaattcttctaagatacatttctatcttgatcatgaaccacatccaacatcgacaaagaacttgatccatttttcgcaaagtaagt |
121 |
Q |
| |
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|||||||||||||||||||||||| | ||| ||||||||| ||||||||||| |||||| | ||||||||||||||||||||||| ||| |||||| |
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| T |
36712355 |
aattgctgcataaattcttctaaggttgattcctatcttgaccatgaaccacaaccaacagcaacaaagaacttgatccatttttctcaatgtaagt |
36712259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 165 - 316
Target Start/End: Original strand, 36664589 - 36664740
Alignment:
| Q |
165 |
aataatttttcttactggcatggctcttatactatgaaatttgagtagtgatcagaacaggaaaaatagcaaagtatgattatgttaatgcagcacaaaa |
264 |
Q |
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|
|||||||||| ||| || | |||||||| || ||| |||||||| |||||| |||||||||||||| ||||||||||||||||| || ||||||||| |
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| T |
36664589 |
aataattttttttattgacttggctcttgtattataaaatttgaatagtgacgagaacaggaaaaatcacaaagtatgattatgttcatcaagcacaaaa |
36664688 |
T |
|
| Q |
265 |
tatacaacactatggacaaagggttcctccaacatatgacatgacaaaaatc |
316 |
Q |
| |
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| ||| |||||||||||| | ||||||||| |||||| |||| |||||| |
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| T |
36664689 |
tctactacactatggacatcgaactcctccaacttatgacttgaccaaaatc |
36664740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 36664271 - 36664377
Alignment:
| Q |
22 |
ccgaattgctgcataaattcttctaagatacatttctatcttgatcatgaaccacatccaacatcgacaaagaacttgatccatttttcgcaaagtaagt |
121 |
Q |
| |
|
|||||||| ||| |||||||||||| || || ||||||||||||||| |||||| ||||| || || ||||| ||||||||||| || |||||||||| |
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| T |
36664271 |
ccgaattgttgcttaaattcttctagaatggatgtctatcttgatcatgtaccacaaccaacgtcaactaagaatttgatccatttctctcaaagtaagt |
36664370 |
T |
|
| Q |
122 |
ttactaa |
128 |
Q |
| |
|
|||||| |
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|
| T |
36664371 |
atactaa |
36664377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 36677489 - 36677440
Alignment:
| Q |
233 |
gcaaagtatgattatgttaatgcagcacaaaatatacaacactatggaca |
282 |
Q |
| |
|
|||||||||||||||||| || |||||||||| ||| |||||||||||| |
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| T |
36677489 |
gcaaagtatgattatgttcatcaagcacaaaatctactacactatggaca |
36677440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 36687571 - 36687522
Alignment:
| Q |
233 |
gcaaagtatgattatgttaatgcagcacaaaatatacaacactatggaca |
282 |
Q |
| |
|
|||||||||||||||||| || |||||||||| ||| |||||||||||| |
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| T |
36687571 |
gcaaagtatgattatgttcatcaagcacaaaatctactacactatggaca |
36687522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 170 - 352
Target Start/End: Original strand, 30905469 - 30905651
Alignment:
| Q |
170 |
tttttcttactggcatggctcttatactatgaaatttgagtagtgatcagaacaggaaaaatagcaaagtatgattatgttaatgcagcacaaaatatac |
269 |
Q |
| |
|
||||| |||||| ||||||| || || |||| || ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||| |
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| T |
30905469 |
ttttttttactgacatggcttttgtattatggtatatgagtagtgatcagaacaggaaaaatagcaaagtatgattatgttgatcaagcacaaaatgtac |
30905568 |
T |
|
| Q |
270 |
aacactatggacaaagggttcctccaacatatgacatgacaaaaatctcaagtgaattcccactttttcttggctatggaggg |
352 |
Q |
| |
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|||||||||| ||| | ||||||||||| || ||| |||| |||||| | | ||| |||||||||||||| || ||||||||| |
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| T |
30905569 |
aacactatggtcaacgagttcctccaacttacgacctgaccaaaatcccgaatgatttcccactttttctcggatatggaggg |
30905651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 30905176 - 30905278
Alignment:
| Q |
25 |
aattgctgcataaattcttctaagatacatttctatcttgatcatgaaccacatccaacatcgacaaagaacttgatccatttttcgcaaagtaagttta |
124 |
Q |
| |
|
||||||||||||||| |||||| |||| || |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| || |
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| T |
30905176 |
aattgctgcataaatgcttctaggatagatatctatcttgatcatgaaccacaaccaacatcaacaaagaacttgatccatttttctcaaagtaagtcta |
30905275 |
T |
|
| Q |
125 |
cta |
127 |
Q |
| |
|
||| |
|
|
| T |
30905276 |
cta |
30905278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 30911588 - 30911694
Alignment:
| Q |
22 |
ccgaattgctgcataaattcttctaagatacatttctatcttgatcatgaaccacatccaacatcgacaaagaacttgatccatttttcgcaaagtaagt |
121 |
Q |
| |
|
|||||||| || ||||| ||||| | |||| ||| ||| || || ||||||||||| |||||||| ||||||||||||||||||| ||| || ||||||| |
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| T |
30911588 |
ccgaattgttgtataaactcttccaggatagattactacctcgaacatgaaccacaaccaacatcaacaaagaacttgatccattattctcagagtaagt |
30911687 |
T |
|
| Q |
122 |
ttactaa |
128 |
Q |
| |
|
|||||| |
|
|
| T |
30911688 |
ctactaa |
30911694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 11294508 - 11294578
Alignment:
| Q |
58 |
tatcttgatcatgaaccacatccaacatcgacaaagaacttgatccatttttcgcaaagtaagtttactaa |
128 |
Q |
| |
|
||||| || |||| |||||| ||||| || ||||||||||||||||||||||| ||||||| || |||||| |
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|
| T |
11294508 |
tatctcgaacatgtaccacaaccaacgtcaacaaagaacttgatccatttttctcaaagtacgtctactaa |
11294578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 11300706 - 11300745
Alignment:
| Q |
209 |
gtagtgatcagaacaggaaaaatagcaaagtatgattatg |
248 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
11300706 |
gtagtgatcagaaaaggaacaatagcaaagtatgattatg |
11300745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 11300385 - 11300455
Alignment:
| Q |
57 |
ctatcttgatcatgaaccacatccaacatcgacaaagaacttgatccatttttcgcaaagtaagtttacta |
127 |
Q |
| |
|
|||||| || ||||||||||| ||||||| |||||||| |||||||||||||| || |||| || ||||| |
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|
| T |
11300385 |
ctatctcgaacatgaaccacaagcaacatcaacaaagaatttgatccatttttctcagagtacgtctacta |
11300455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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