View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9349_low_24 (Length: 383)
Name: NF9349_low_24
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 48672321 - 48672676
Alignment:
| Q |
18 |
atatggaagctaaggaaaaagttaaaagaggagaccgtgtttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttggcgttcgatgcg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48672321 |
atatggaagctaaggaaaaagttaaaagaggagaccgtgtttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttggcgttcgatgcg |
48672420 |
T |
|
| Q |
118 |
tcgtgttacaaaaccttcttctaggaacccttggcttgactgcattgatgcataccctgcttctctcaattaaaaagcacttttattattatgatcaatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48672421 |
tcgtgttacaaaaccttcttctaggaacccttggcttgactgcattgatgcataccctgcttctctcaattaaaaagcacttttattattatgatcaatc |
48672520 |
T |
|
| Q |
218 |
tatgatattgatcagtgatgatgattatgaaattaagacttatttaggatatgaaataatggtagttttagttaagttggtgttttaaattttaattcct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48672521 |
tatgatattgatcagtgatgatgattatgaaattaagacttatttaggatatgaaataatggtagttttagttaagttggtgttttaaattttaattcct |
48672620 |
T |
|
| Q |
318 |
ggcttgtgatattgcatactgttacactgaggcatatataacatcatgtgcctttg |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48672621 |
ggcttgtgatattgcatactgttacactgaggcatatataacatcatgtgcctttg |
48672676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 15239657 - 15239705
Alignment:
| Q |
58 |
ttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttgg |
106 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15239657 |
ttggcaaattgcatttggttctggttttaagtgtaatagtgctgtttgg |
15239705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 34053356 - 34053407
Alignment:
| Q |
58 |
ttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttggcgt |
109 |
Q |
| |
|
||||||| |||| ||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
34053356 |
ttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtggcgt |
34053407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 19742853 - 19742804
Alignment:
| Q |
57 |
tttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttgg |
106 |
Q |
| |
|
|||||||| |||| ||||| ||||| ||||||||||||| |||||||||| |
|
|
| T |
19742853 |
tttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttgg |
19742804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 19797235 - 19797284
Alignment:
| Q |
57 |
tttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttgg |
106 |
Q |
| |
|
|||||||| |||| ||||| ||||| ||||||||||||| |||||||||| |
|
|
| T |
19797235 |
tttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttgg |
19797284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University