View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_25 (Length: 380)
Name: NF9349_low_25
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 99 - 372
Target Start/End: Original strand, 39347960 - 39348233
Alignment:
| Q |
99 |
ggtgtatacacttatgaggtgtctaagatgcgttttaaaatactctagcaccaatattgctagttcctctacttggagcttcatcatcaaacctaaagac |
198 |
Q |
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| T |
39347960 |
ggtgtatacacttatgaggtgtctaagatgcgttttaaaatattctagcaccaatattgctagttcctctacttggagcttcatcatcaaacctaaagac |
39348059 |
T |
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| Q |
199 |
atccttaaggattgttttacttgacgagcaagctatgacaactcttcttctttctaatttagccattggacctcctttggactcctatgtaccatcgttg |
298 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
39348060 |
atccttaaggattgttttacttggcgagcaagctatgacaactcttcttctttctagtttagccattagacctcctttggactcctatgtaccattgttg |
39348159 |
T |
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| Q |
299 |
ttccctttgtgcatataaatgatcttgctatgagaatcaacgaagtttgtgagtcgtctcctcatccctatgct |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||| |
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| T |
39348160 |
ttccctttgtgcatataaatgatcttgctatgagaatcaacgaagtttgtgagttgtctcctcatacctttgct |
39348233 |
T |
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