View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9349_low_26 (Length: 369)

Name: NF9349_low_26
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9349_low_26
NF9349_low_26
[»] chr1 (1 HSPs)
chr1 (6-345)||(24975691-24976029)
[»] chr5 (4 HSPs)
chr5 (6-345)||(23490410-23490744)
chr5 (107-350)||(13537618-13537860)
chr5 (218-345)||(42790481-42790608)
chr5 (70-147)||(42790657-42790733)
[»] scaffold0096 (1 HSPs)
scaffold0096 (6-350)||(24328-24671)
[»] chr6 (3 HSPs)
chr6 (8-350)||(27963583-27963924)
chr6 (67-345)||(18733957-18734234)
chr6 (46-224)||(19861955-19862132)
[»] chr4 (5 HSPs)
chr4 (16-320)||(18278375-18278678)
chr4 (183-350)||(3844141-3844307)
chr4 (120-345)||(15311016-15311241)
chr4 (180-311)||(10268088-10268219)
chr4 (69-116)||(10268273-10268320)
[»] scaffold0008 (1 HSPs)
scaffold0008 (58-339)||(251332-251612)
[»] scaffold0034 (1 HSPs)
scaffold0034 (43-358)||(26662-26976)
[»] chr2 (2 HSPs)
chr2 (67-291)||(23927793-23928015)
chr2 (254-354)||(27345485-27345585)
[»] scaffold0433 (1 HSPs)
scaffold0433 (183-350)||(10853-11019)
[»] scaffold0192 (1 HSPs)
scaffold0192 (91-345)||(8027-8286)
[»] scaffold0002 (1 HSPs)
scaffold0002 (42-345)||(386543-386845)
[»] scaffold0063 (1 HSPs)
scaffold0063 (67-249)||(39524-39705)
[»] chr8 (2 HSPs)
chr8 (158-251)||(24039908-24040001)
chr8 (305-345)||(16093051-16093091)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 6 - 345
Target Start/End: Original strand, 24975691 - 24976029
Alignment:
Q  6 agaagcagagagaaagaccgtcgaactcatcattgacggctccgagcctggtaagaaagttgccatgtccgtggaacatctcggtgatttccctgacaac 105  Q
    ||||||||| ||||| |||||||| || ||| |||| ||||| ||||||||||||| ||||||||||||| | |||||||||||||| ||||||||||||    
T  24975691 agaagcagaaagaaaaaccgtcgagcttatcgttgatggctcagagcctggtaagacagttgccatgtccatagaacatctcggtgacttccctgacaac 24975790  T
Q  106 gtggaaatcacccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagaga 205  Q
    ||||||||||||||  || |||||||||||||||||||||||||  |||||||| ||| ||||||||| | ||||| |||||||||  ||||||||||||    
T  24975791 gtggaaatcacccct-tattcatgcacctgggagcagttcccctccgccaacgttatcacgggaggaacactgaacgtctccatggagagcatgaagaga 24975889  T
Q  206 aagttcgaggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagctt 305  Q
    ||||||||||||||||||||||| |||||| | | |||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24975890 aagttcgaggaactcatgagtgtaaacttgctagccccctccaaccacggaggaaggccacctttggcgttctatgattcagaacttcctggtggagctt 24975989  T
Q  306 caaattcagccattcctttgctcgtgcgagcatcgatggc 345  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24975990 caaattcagccattcctttgctcgtgcgagcatcgatggc 24976029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 345
Target Start/End: Complemental strand, 23490744 - 23490410
Alignment:
Q  6 agaagcagagagaaagaccgtcgaactcatcattgacggctccgagcctggtaagaaagttgccatgtccgtggaacatctcggtgatttccctgacaac 105  Q
    |||||| || |||||||||||||| |||||| | |||| ||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  23490744 agaagcggaaagaaagaccgtcgagctcatcgtggacgactccgagcctgttaagatagttgccatgtctgtggaacatctcggtgatttccctgacaac 23490645  T
Q  106 gtggaaatcacccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagaga 205  Q
    |||||||||| |||  ||||||||||||||||||||||||||||  |||||||| ||| | ||||||| | | ||| |||||||||| ||||||||||||    
T  23490644 gtggaaatca-cccgttactcatgcacctgggagcagttcccctccgccaacgttatcacaggaggaacactaaacgtctccatggggagcatgaagaga 23490546  T
Q  206 aagttcgaggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagctt 305  Q
    |||||||||||||||||||||||    ||| | | || ||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23490545 aagttcgaggaactcatgagtgt----ttgctagccctctcgaaccacggaggaaggccacctttggcattctatgattcagaacttcttggtggagctt 23490450  T
Q  306 caaattcagccattcctttgctcgtgcgagcatcgatggc 345  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23490449 caaattcagccattcctttgctcgtgcgagcatcgatggc 23490410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 107 - 350
Target Start/End: Complemental strand, 13537860 - 13537618
Alignment:
Q  107 tggaaatcacccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaa 206  Q
    |||||||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||||  ||||||||||||||||||||||||    
T  13537860 tggaaatcacccct-tactcatgcacctgggagcagttcccctctgccaacgtcatcacgggaggaacactgaatgtctccatgggaagcatgaagagaa 13537762  T
Q  207 agttcgaggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttc 306  Q
    |||| |||||||||||||||||||||||| |||  ||||||||||   ||||||| |||||||||||||||||||||||| ||||||||||||||| |||    
T  13537761 agtttgaggaactcatgagtgtcaacttgctggctccctccaaccacagaggaagaccacctttggcattctatgattcaaaacttcctggtggagtttc 13537662  T
Q  307 aaattcagccattcctttgctcgtgcgagcatcgatggcaaatg 350  Q
    |||||||| |||||||||||||||||||||||| ||||| ||||    
T  13537661 aaattcagtcattcctttgctcgtgcgagcatcaatggccaatg 13537618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 345
Target Start/End: Complemental strand, 42790608 - 42790481
Alignment:
Q  218 ctcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttcaaattcagcca 317  Q
    |||||||| ||||||||| ||| ||| |||||||| ||||| || ||||| ||||| ||||| || ||||||||||| |||||| |||||||| ||||||    
T  42790608 ctcatgagcgtcaacttgctggccccttccaacctcggagggagaccacccttggcgttctacgactcagaacttcccggtggatcttcaaatgcagcca 42790509  T
Q  318 ttcctttgctcgtgcgagcatcgatggc 345  Q
    |||| ||| ||||  ||||||| |||||    
T  42790508 ttccattgttcgtatgagcatcaatggc 42790481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 42790733 - 42790657
Alignment:
Q  70 atgtccgtggaacatctcggtgatttccctgacaacgtggaaatcacccccctactcatgcacctgggagcagttccc 147  Q
    |||||||||||||| || |||||||||||||||||||||| ||||| |||||||||||||||| ||||| ||||||||    
T  42790733 atgtccgtggaacagctgggtgatttccctgacaacgtgggaatca-ccccctactcatgcacttgggaacagttccc 42790657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 350
Target Start/End: Original strand, 24328 - 24671
Alignment:
Q  6 agaagcagagagaaagaccgtcgaactcatcattgacggctccgagcctggtaagaaagttgccatgtccgtggaacatctcggtgatttccctgacaac 105  Q
    |||||| || |||||||||||||| ||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| |||    
T  24328 agaagcggaaagaaagaccgtcgagctcatcattgatggctctgagtctggtaagacagttgccatgtccgtggaacatctcggtgatttgcctgagaac 24427  T
Q  106 gtggaaatcacccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagaga 205  Q
    |||||||||||||   ||||||||||| ||| ||||||||||||  |||||  | ||| ||||||||| | ||||| |||||||||| |||||||||||     
T  24428 gtggaaatcaccctt-tactcatgcacgtggcagcagttcccctccgccaattttatcacgggaggaacactgaacgtctccatggggagcatgaagagg 24526  T
Q  206 aagttcgaggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagctt 305  Q
    |||||||||||||||||||||||||||||| | | ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24527 aagttcgaggaactcatgagtgtcaacttgctagccccctccaatcacggaggaaggccacctttggcattctatgattcagaacttcctggcggagctt 24626  T
Q  306 caaattcagccattcctttgctcgtgcgagcatcgatggcaaatg 350  Q
    |||| | |||||||||||| || || | |||||||||||| ||||    
T  24627 caaactaagccattccttttctagtacaagcatcgatggccaatg 24671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 8 - 350
Target Start/End: Complemental strand, 27963924 - 27963583
Alignment:
Q  8 aagcagagagaaagaccgtcgaactcatcattgacggctccgagcctggtaagaaagttgccatgtccgtggaacatctcggtgatttccctgacaacgt 107  Q
    ||||||| |||||||||||||| ||| || | |||||||||||||||||||||  |||| ||||||||||| ||||||||||||||||||| |||||| |    
T  27963924 aagcagaaagaaagaccgtcgagctcgtcgtagacggctccgagcctggtaaggcagtttccatgtccgtgaaacatctcggtgatttcccggacaactt 27963825  T
Q  108 ggaaatcacccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaa 207  Q
    ||||| ||||||  ||||||||||| ||||| ||||| ||||  |||||||| ||| |||||||||   | ||| |||||||||| ||||||||||||||    
T  27963824 ggaaaccacccct-tactcatgcacgtgggaacagtttccctccgccaacgttatcacgggaggaacgctaaacgtctccatggggagcatgaagagaaa 27963726  T
Q  208 gttcgaggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttca 307  Q
     || || ||||||||||||||||||||| | | |||||||||||  |||||||||||||||||||| ||||||||||||||||||||| || ||||||||    
T  27963725 ttttgaagaactcatgagtgtcaacttgctagccccctccaaccacggaggaaggccacctttggcgttctatgattcagaacttccttgtagagcttca 27963626  T
Q  308 aattcagccattcctttgctcgtgcgagcatcgatggcaaatg 350  Q
    ||||||||||||||||||||||| |||||||||||||| ||||    
T  27963625 aattcagccattcctttgctcgtacgagcatcgatggccaatg 27963583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 67 - 345
Target Start/End: Complemental strand, 18734234 - 18733957
Alignment:
Q  67 gccatgtccgtggaacatctcggtgatttccctgacaacgtggaaatcacccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccg 166  Q
    ||||||||||| |||||||| |||||||||| ||| ||| |||||||||||||| ||||||| ||||| ||||||||| |||| ||||||||||||| ||    
T  18734234 gccatgtccgttgaacatctgggtgatttccttgataacttggaaatcaccccc-tactcattcacctaggagcagtttccctctgccaacgtcatcacg 18734136  T
Q  167 ggaggaatattgaacatctccatgggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccac 266  Q
    |||||||   | ||||||||||||||||||||||||||||||||||| |||||||  |||||||||||| |||  |||||||||||    || |  ||||    
T  18734135 ggaggaacggtcaacatctccatgggaagcatgaagagaaagttcgaagaactcaaaagtgtcaacttgctggaaccctccaacctcaagggtaaaccac 18734036  T
Q  267 ctttggcattctatgattcagaacttcctggtggagcttcaaattcagccattcctttgctcgtgcgagcatcgatggc 345  Q
    || |||| |||||  |||||||||| || |||||||| |||||||||| |||||| |||||||| |||||||| |||||    
T  18734035 ctctggcgttctacaattcagaactaccaggtggagcctcaaattcagtcattccgttgctcgtacgagcatcaatggc 18733957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 46 - 224
Target Start/End: Original strand, 19861955 - 19862132
Alignment:
Q  46 tccgagcctggtaagaaagttgccatgtccgtggaacatctcggtgatttccctgacaacgtggaaatcacccccctactcatgcacctgggagcagttc 145  Q
    ||||||||| | |||| |||| |||| ||||| |||||||| |||||||||| | |  |  | ||||||||||| ||||||| |||||||||||||||||    
T  19861955 tccgagcctcgcaagacagtttccatatccgttgaacatctgggtgatttccttcaagatatagaaatcacccc-ctactcaagcacctgggagcagttc 19862053  T
Q  146 ccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaagttcgaggaactcatga 224  Q
    ||||  ||||||| |||| |  ||||||   |  ||||||||||||||| ||||||||| || ||||| || |||||||    
T  19862054 ccctccgccaacggcatcacaagaggaacgctagacatctccatgggaaacatgaagaggaaattcgaagagctcatga 19862132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 9e-86; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 18278375 - 18278678
Alignment:
Q  16 agaaagaccgtcgaactcatcattgacggctccgagcctggtaagaaagttgccatgtccgtggaacatctcggtgatttccctgacaacgtggaaatca 115  Q
    |||||||||||||| |||||| |||||||||| ||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |||||||    
T  18278375 agaaagaccgtcgagctcatcgttgacggctctgagcctggtaagacagtcgccaagtccgtggaacatctcggtgatttccctgacaacgtcgaaatca 18278474  T
Q  116 cccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaagttcgagg 215  Q
    |||   ||||||||||||||||| || |||||||  |||||||||||| ||||||||| |  |||| |||||||||  |||||||||||||||||| |||    
T  18278475 cccgt-tactcatgcacctgggaacatttcccctccgccaacgtcatcacgggaggaacaccgaacgtctccatggacagcatgaagagaaagttcaagg 18278573  T
Q  216 aactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttcaaattcagc 315  Q
    | ||||||||| |||||||| | | |||||| | ||  ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |    
T  18278574 atctcatgagtatcaacttgctagccccctctacccacggaggaaggccacctttggcattctatgattcagaacttcccgatggagcttcaaatttacc 18278673  T
Q  316 cattc 320  Q
    |||||    
T  18278674 cattc 18278678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 183 - 350
Target Start/End: Complemental strand, 3844307 - 3844141
Alignment:
Q  183 tctccatgggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatga 282  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||  || |||||||   |||||||||||| ||||| |||||||||    
T  3844307 tctccatgagaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgctggctccttccaaccacagaggaaggccacgtttggaattctatga 3844208  T
Q  283 ttcagaacttcctggtggagcttcaaattcagccattcctttgctcgtgcgagcatcgatggcaaatg 350  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||    
T  3844207 ttcggaacttcctggtggagcttcaaattcagccattcctttactcgtgcga-catcgatggccaatg 3844141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 120 - 345
Target Start/End: Complemental strand, 15311241 - 15311016
Alignment:
Q  120 cctactcatgcacctgggagcagttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaagttcgaggaact 219  Q
    |||| |||||||| ||||| || |||||||  |||||||||||| | ||||||||| || ||||||||||||||| ||||||||  || ||| |  | ||    
T  15311241 cctagtcatgcacatgggaacaattcccctccgccaacgtcatcacaggaggaatactggacatctccatgggaatcatgaagaagaaattcaaaaagct 15311142  T
Q  220 catgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttcaaattcagccatt 319  Q
    |||||| ||||||||| ||| ||||||||||  ||||||||| ||||||||||| ||||| || |  ||||| || ||||||||||||||||  ||||||    
T  15311141 catgagcgtcaacttgctggccccctccaacaatggaggaagaccacctttggcgttctacgactacgaactgcccggtggagcttcaaattttgccatt 15311042  T
Q  320 cctttgctcgtgcgagcatcgatggc 345  Q
    ||||||||||||||||||||||||||    
T  15311041 cctttgctcgtgcgagcatcgatggc 15311016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 180 - 311
Target Start/End: Complemental strand, 10268219 - 10268088
Alignment:
Q  180 acatctccatgggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattcta 279  Q
    |||| |||||||||||||||||||| || ||||| || |||||||| ||||||||| ||||||||||||||| | ||||||| |||| |||||| |||||    
T  10268219 acatttccatgggaagcatgaagaggaaattcgaagagctcatgagcgtcaacttgctggtcccctccaaccatagaggaagaccacttttggcgttcta 10268120  T
Q  280 tgattcagaacttcctggtggagcttcaaatt 311  Q
     || |  ||||| || |||||||| |||||||    
T  10268119 cgactacgaactgcccggtggagcctcaaatt 10268088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 10268320 - 10268273
Alignment:
Q  69 catgtccgtggaacatctcggtgatttccctgacaacgtggaaatcac 116  Q
    |||||||||||||||||| ||||||||||| |||||| | ||||||||    
T  10268320 catgtccgtggaacatctgggtgatttccccgacaacatagaaatcac 10268273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 58 - 339
Target Start/End: Complemental strand, 251612 - 251332
Alignment:
Q  58 aagaaagttgccatgtccgtggaacatctcggtgatttccctgacaacgtggaaatcacccccctactcatgcacctgggagcagttcccctatgccaac 157  Q
    |||| ||| |||||||||||||||||||| ||  ||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||  ||||||    
T  251612 aagatagtcgccatgtccgtggaacatctgggcaatttccctgacaatgtggaaatcaccccc-tactcatgcacctgggaacagtttccctccgccaac 251514  T
Q  158 gtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtcccctccaaccttggag 257  Q
    |||||| |||| ||||   ||||||||| ||||||||||||||||||||||||||| || || ||||| || ||| || ||| ||||||||||  |||||    
T  251513 gtcatcacgggcggaacgctgaacatcttcatgggaagcatgaagagaaagttcgaagagctaatgagcgtgaacctgctggccccctccaacaatggag 251414  T
Q  258 gaaggccacctttggcattctatgattcagaacttcctggtggagcttcaaattcagccattcctttgctcgtgcgagcatc 339  Q
    |||| | |||| |||||||||| || |||||||| ||  ||||||| |||||||||||||||||||||||||||||||||||    
T  251413 gaagactacctatggcattctacgactcagaactacccagtggagcctcaaattcagccattcctttgctcgtgcgagcatc 251332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 43 - 358
Target Start/End: Original strand, 26662 - 26976
Alignment:
Q  43 ggctccgagcctggtaagaaagttgccatgtccgtggaacatctcggtgatttccctgacaacgtggaaatcacccccctactcatgcacctgggagcag 142  Q
    |||||||||||||| |||| |||||||||||| |||||||| || ||||||||||||||  |  | |||||||||| | |||||||||| || || ||||    
T  26662 ggctccgagcctggcaagacagttgccatgtctgtggaacaactgggtgatttccctgaagatatagaaatcacccgc-tactcatgcagctaggtgcag 26760  T
Q  143 ttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtcc 242  Q
    ||||||| |||||||||||||   |||||||   || ||||||||||||||||||||||||| || ||||| || |||||||| ||||||||| | ||||    
T  26761 ttcccctctgccaacgtcatcataggaggaacgctggacatctccatgggaagcatgaagaggaaattcgaagagctcatgagcgtcaacttgctagtcc 26860  T
Q  243 cctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttcaaattcagccattcctttgctcgtgcgagcatcgat 342  Q
    |||||||||  |||||||| |||||||| || ||||| || || ||||| |||||||||||||||||||  |||||||||||||||| || |||||||||    
T  26861 cctccaaccacggaggaagaccacctttcgcgttctacgactccgaactacctggtggagcttcaaattatgccattcctttgctcgcgcaagcatcgat 26960  T
Q  343 ggcaaatgttgatgtc 358  Q
    ||| || || ||||||    
T  26961 ggccaacgtagatgtc 26976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 67 - 291
Target Start/End: Complemental strand, 23928015 - 23927793
Alignment:
Q  67 gccatgtccgtggaacatctcggtgatttccctgacaacgtggaaatcacccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccg 166  Q
    |||||||  ||||||||||| || |||||||||||||||||||||||||||||  ||| ||||||||||||| ||||| ||||  |||||||||||| ||    
T  23928015 gccatgtttgtggaacatctgggcgatttccctgacaacgtggaaatcacccc--tacacatgcacctgggaacagtttccctccgccaacgtcatcacg 23927918  T
Q  167 ggaggaatattgaacatctccatgggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccac 266  Q
    |||||||   ||||||||| ||||||||||||||||||||| ||||| || ||||||||||||||| || ||| ||||||||||| ||||||||| | ||    
T  23927917 ggaggaacgctgaacatctgcatgggaagcatgaagagaaaattcgaagagctcatgagtgtcaacctgctggccccctccaaccgtggaggaagactac 23927818  T
Q  267 ctttggcattctatgattcagaact 291  Q
    ||||||| ||||| || ||||||||    
T  23927817 ctttggcgttctacgactcagaact 23927793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 254 - 354
Target Start/End: Complemental strand, 27345585 - 27345485
Alignment:
Q  254 ggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttcaaattcagccattcctttgctcgtgcgagcatcgatggcaaatgttg 353  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27345585 ggaggaaggccacctttggcattctatgattcagaacttcccggtggggcttcaaattcagccattcctttgctcgtgcaagcatcgatggcaaatgttg 27345486  T
Q  354 a 354  Q
    |    
T  27345485 a 27345485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 183 - 350
Target Start/End: Original strand, 10853 - 11019
Alignment:
Q  183 tctccatgggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatga 282  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||  || |||||||   |||||||||||| ||||| |||||||||    
T  10853 tctccatgagaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgctggctccttccaaccacagaggaaggccacgtttggaattctatga 10952  T
Q  283 ttcagaacttcctggtggagcttcaaattcagccattcctttgctcgtgcgagcatcgatggcaaatg 350  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||    
T  10953 ttcggaacttcctggtggagcttcaaattcagccattcctttactcgtgcga-catcgatggccaatg 11019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 91 - 345
Target Start/End: Complemental strand, 8286 - 8027
Alignment:
Q  91 gatttccctgacaacgtggaaatcacccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccgggaggaatattgaacatctccatg 190  Q
    |||||||||||||| |||||||||   ||  ||||||||||||||||| |||||||| | ||||||||||||| ||||||||| | | || ||||| ||     
T  8286 gatttccctgacaatgtggaaatcgtacct-tactcatgcacctgggaacagttcccttctgccaacgtcatcacgggaggaacagtaaatatctctata 8188  T
Q  191 ggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtccc------ctccaaccttggaggaaggccacctttggcattctatgatt 284  Q
    ||||||||||| ||||| || ||||| |||||||||||||| ||| |||||||       |||||| | |||||||| ||||| ||||||||||| || |    
T  8187 ggaagcatgaatagaaaatttgaggagctcatgagtgtcaatttgctggtcccttttgattccaacatcggaggaagaccacccttggcattctacgact 8088  T
Q  285 cagaacttcctggtggagcttcaaattcagccattcctttgctcgtgcgagcatcgatggc 345  Q
    | ||||| ||| |||| | ||||||||||||||||| ||||||||||||||||||||||||    
T  8087 ctgaactgcctagtgggggttcaaattcagccattcatttgctcgtgcgagcatcgatggc 8027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 42 - 345
Target Start/End: Complemental strand, 386845 - 386543
Alignment:
Q  42 cggctccgagcctggtaagaaagttgccatgtccgtggaacatctcggtgatttccctgacaacgtggaaatcacccccctactcatgcacctgggagca 141  Q
    ||||||||||||||| || |  ||||||||||  ||||||||||| | ||||||||| |||||| | |||||| ||||| |||||||| |||||||| ||    
T  386845 cggctccgagcctggcaaaactgttgccatgtttgtggaacatctagatgatttccccgacaaccttgaaatcgccccc-tactcatgaacctgggaaca 386747  T
Q  142 gttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtc 241  Q
    ||||||||  |||||| ||||| |  ||||||  ||| ||||||||||||||||||||||||| || || || || |||| ||| || ||||| || |||    
T  386746 gttcccctccgccaacatcatcactagaggaacgttggacatctccatgggaagcatgaagaggaaatttgaagagctcacgagcgttaacttttttgtc 386647  T
Q  242 ccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttcaaattcagccattcctttgctcgtgcgagcatcga 341  Q
    ||||||||||  |||||||| |||||  || | ||| | || |  || || ||| ||||||| |||||||| ||||| |||||||| ||  |||||||||    
T  386646 ccctccaaccacggaggaagaccacccctgacgttccacgacttggagctacctagtggagcctcaaattctgccatacctttgcttgtatgagcatcga 386547  T
Q  342 tggc 345  Q
    ||||    
T  386546 tggc 386543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 39524 - 39705
Alignment:
Q  67 gccatgtccgtggaacatctcggtgatttccctgacaacgtggaaatcacccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccg 166  Q
    ||||||| |||||| ||| | |||||||| ||||||||||||||| ||    ||||||||||||| |||||| ||||| || |  | |||||||||| ||    
T  39524 gccatgtacgtggatcatttgggtgattttcctgacaacgtggaagtc-gtaccctactcatgcagctgggaacagtttccatccgtcaacgtcatcacg 39622  T
Q  167 ggaggaatattgaacatctccatgggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtcccctccaa 249  Q
    |||||||   ||||||||||||||||||||||||| ||||| || || ||||||||||| |||||| || |||||||||||||    
T  39623 ggaggaacgatgaacatctccatgggaagcatgaaaagaaattttgaagaactcatgagcgtcaacctgctggtcccctccaa 39705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 24040001 - 24039908
Alignment:
Q  158 gtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtcccctccaacc 251  Q
    |||||| | |||||||  ||| ||||||||||||||||||||||||| || ||||| || |||||||| ||||||||| |||||||||||||||    
T  24040001 gtcatcacaggaggaacgttggacatctccatgggaagcatgaagaggaaattcgaagagctcatgagcgtcaacttgctggtcccctccaacc 24039908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 16093051 - 16093091
Alignment:
Q  305 tcaaattcagccattcctttgctcgtgcgagcatcgatggc 345  Q
    ||||||||||||||||||||||||| ||||||||| |||||    
T  16093051 tcaaattcagccattcctttgctcgggcgagcatcaatggc 16093091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University