View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9349_low_29 (Length: 361)

Name: NF9349_low_29
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9349_low_29
NF9349_low_29
[»] chr8 (6 HSPs)
chr8 (149-361)||(45245276-45245488)
chr8 (149-361)||(40886819-40887028)
chr8 (173-343)||(361028-361198)
chr8 (242-357)||(41527034-41527149)
chr8 (16-55)||(45245580-45245619)
chr8 (242-314)||(17888057-17888129)
[»] chr3 (8 HSPs)
chr3 (149-361)||(40057734-40057946)
chr3 (149-361)||(39184123-39184335)
chr3 (162-357)||(14045356-14045551)
chr3 (149-343)||(2250956-2251150)
chr3 (149-343)||(20790293-20790487)
chr3 (16-55)||(39184427-39184466)
chr3 (16-55)||(40058039-40058078)
chr3 (242-314)||(20779571-20779643)
[»] chr1 (6 HSPs)
chr1 (149-343)||(19102631-19102825)
chr1 (190-343)||(21467631-21467784)
chr1 (242-357)||(49881768-49881885)
chr1 (282-314)||(1992439-1992471)
chr1 (282-314)||(20306770-20306802)
chr1 (282-314)||(40946536-40946568)
[»] chr6 (3 HSPs)
chr6 (149-343)||(33348071-33348265)
chr6 (173-343)||(21986251-21986421)
chr6 (282-314)||(7428522-7428554)
[»] chr5 (5 HSPs)
chr5 (149-343)||(30326909-30327103)
chr5 (162-342)||(23570509-23570689)
chr5 (242-357)||(9024919-9025034)
chr5 (16-55)||(27593415-27593454)
chr5 (310-361)||(27593537-27593588)
[»] scaffold0114 (1 HSPs)
scaffold0114 (242-357)||(37007-37122)
[»] chr4 (2 HSPs)
chr4 (242-357)||(6554508-6554623)
chr4 (242-357)||(314290-314405)
[»] scaffold0284 (1 HSPs)
scaffold0284 (242-357)||(833-948)
[»] chr2 (4 HSPs)
chr2 (242-357)||(31965845-31965960)
chr2 (310-360)||(24969012-24969062)
chr2 (282-314)||(19040714-19040746)
chr2 (282-314)||(39839125-39839157)
[»] scaffold0211 (1 HSPs)
scaffold0211 (242-357)||(18457-18572)
[»] scaffold1345 (1 HSPs)
scaffold1345 (282-314)||(1865-1897)
[»] chr7 (1 HSPs)
chr7 (282-314)||(43989699-43989731)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 149 - 361
Target Start/End: Complemental strand, 45245488 - 45245276
Alignment:
Q  149 tcatcttaatttcgggacttctaggggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcctttcatctc 248  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45245488 tcatctaaatttcgggacttctaggggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcctttcatctc 45245389  T
Q  249 gcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactctctgtgt 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  45245388 gcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactctttgtat 45245289  T
Q  349 ccataattatgtg 361  Q
    |||||||||||||    
T  45245288 ccataattatgtg 45245276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 149 - 361
Target Start/End: Complemental strand, 40887028 - 40886819
Alignment:
Q  149 tcatcttaatttcgggacttctaggggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcctttcatctc 248  Q
    ||||||||||||| |||||||    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40887028 tcatcttaatttcaggacttc----ggatcctaccttgagttttatcaccacattagactaagagacgatacacaagtgaaaatgatatcctttcatctc 40886933  T
Q  249 gcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacactt-gacacatttattcctcttattcagatttgcaactctctgtg 347  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  40886932 gcttatatgttgttcaaaacctacccttccatcaaatataaatttttaactcacacttagacacatttatacctcttattcaaatttgcaactctctgtg 40886833  T
Q  348 tccataattatgtg 361  Q
    |||| |||||||||    
T  40886832 tccacaattatgtg 40886819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 173 - 343
Target Start/End: Complemental strand, 361198 - 361028
Alignment:
Q  173 gggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcctttcatctcgcttatatgttgtccaaaacctac 272  Q
    ||||||||| |||||| |||||| ||||||||||| ||||||  ||||| ||||||||||||||||||| |||||  |||||||||||| |||||  ||     
T  361198 gggatcctatcttgagttttatcaccacattagaccaagagaaaatacaaaagtgaaattgatatccttccatcttacttatatgttgttcaaaatttat 361099  T
Q  273 ccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactctc 343  Q
    | ||| ||||||||||||||||||||||| |||||||||||| |  ||||||||||| |||||||||||||    
T  361098 cattccatccaatataaatttttaactcatacttgacacattaacacctcttattcaaatttgcaactctc 361028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 357
Target Start/End: Original strand, 41527034 - 41527149
Alignment:
Q  242 tcatctcgcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactc 341  Q
    ||||||| |||||||||| | ||||| |||| |||| ||||| |||| | ||||||||||||||||||||||| ||  ||||||||||  ||||||||||    
T  41527034 tcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaatatctcttattcaagtttgcaactc 41527133  T
Q  342 tctgtgtccataatta 357  Q
    ||||||| ||||||||    
T  41527134 tctgtgttcataatta 41527149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 45245619 - 45245580
Alignment:
Q  16 agaccaaaagtaaaggaatttaaaataagggaggttgaat 55  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45245619 agaccaaaagtaaaggaatttaaaataagggaggttgaat 45245580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 17888129 - 17888057
Alignment:
Q  242 tcatctcgcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatt 314  Q
    ||||||| |||||||||||| ||||| |||| |||| ||||| | || | | |||||||||| ||||||||||    
T  17888129 tcatctcacttatatgttgttcaaaatctactcttccatccagtgtataatgttaactcacatttgacacatt 17888057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 149 - 361
Target Start/End: Complemental strand, 40057946 - 40057734
Alignment:
Q  149 tcatcttaatttcgggacttctaggggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcctttcatctc 248  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40057946 tcatcttaattttgggacttctaagggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcctttcatctc 40057847  T
Q  249 gcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactctctgtgt 348  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| |||| |||||| ||||||||||||||||||    
T  40057846 gcttatatgttgtccaaaacctacccttccatccaatataaatttttaactcacatttgactcatttatacctcctattcaaatttgcaactctctgtgt 40057747  T
Q  349 ccataattatgtg 361  Q
    || ||||||||||    
T  40057746 ccctaattatgtg 40057734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 149 - 361
Target Start/End: Complemental strand, 39184335 - 39184123
Alignment:
Q  149 tcatcttaatttcgggacttctaggggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcctttcatctc 248  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39184335 tcatcttaatttcgagacttctaagggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcatttcatctc 39184236  T
Q  249 gcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactctctgtgt 348  Q
    |||||||||||||||||||| |||||||| |||||||||||| ||| ||| |||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  39184235 gcttatatgttgtccaaaacttacccttccatccaatataaactttaaacccacacttgacacatttatacctcttattcaaatttgcaactctctgtgt 39184136  T
Q  349 ccataattatgtg 361  Q
    |||||||||||||    
T  39184135 ccataattatgtg 39184123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 162 - 357
Target Start/End: Complemental strand, 14045551 - 14045356
Alignment:
Q  162 gggacttctaggggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcctttcatctcgcttatatgttgt 261  Q
    |||||||| | || ||||||||||||  ||||||||||||||||||||| |||  ||||||||||||||||||||||||| |||||| ||||||||||||    
T  14045551 gggacttccaaggaatcctaccttgatttttatcgccacattagactaaaagaaaatacacaagtgaaattgatatccttccatctcacttatatgttgt 14045452  T
Q  262 ccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactctctgtgtccataatta 357  Q
     ||||   |||| ||| |||||||||||| |||||||||||||| |||||||| |  ||||||||||| |||||||| ||||||||||||||||||    
T  14045451 tcaaattttaccattccatccaatataaaattttaactcacactcgacacattaacacctcttattcaaatttgcaagtctctgtgtccataatta 14045356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 149 - 343
Target Start/End: Complemental strand, 2251150 - 2250956
Alignment:
Q  149 tcatcttaatttcgggacttctaggggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcctttcatctc 248  Q
    ||||| ||| || |||||||| | ||||||||| |||||| |||||| ||||||||||| ||||||  ||||||||||||||||||||||||| ||||||    
T  2251150 tcatcataactttgggacttccaagggatcctatcttgagttttatcaccacattagaccaagagaaaatacacaagtgaaattgatatccttccatctc 2251051  T
Q  249 gcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactctc 343  Q
     |||||||||||| |||||  || | ||| ||||||||||||||||||||||| |||||||||||| |   |||||||||| |||||||||||||    
T  2251050 acttatatgttgttcaaaatttatcattccatccaatataaatttttaactcatacttgacacattaacatctcttattcaaatttgcaactctc 2250956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 149 - 343
Target Start/End: Complemental strand, 20790487 - 20790293
Alignment:
Q  149 tcatcttaatttcgggacttctaggggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcctttcatctc 248  Q
    ||||| ||| || |||||||| | ||||||||| |||||| |||||||||||||||||| ||||||   |||||||||||||||||||||||| ||||||    
T  20790487 tcatcataactttgggacttccaagggatcctatcttgagttttatcgccacattagaccaagagaaattacacaagtgaaattgatatccttccatctc 20790388  T
Q  249 gcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactctc 343  Q
     ||||||||||||  ||||  || | ||| ||||||||||||||||||||||| |||||||||||| |  ||||||||||| |||||||||||||    
T  20790387 acttatatgttgttaaaaatttatcattccatccaatataaatttttaactcatacttgacacattaacacctcttattcaaatttgcaactctc 20790293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 39184466 - 39184427
Alignment:
Q  16 agaccaaaagtaaaggaatttaaaataagggaggttgaat 55  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  39184466 agaccaaaagtaaaagaatttgaaataagggaggttgaat 39184427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 40058078 - 40058039
Alignment:
Q  16 agaccaaaagtaaaggaatttaaaataagggaggttgaat 55  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  40058078 agaccaaaagtaaaagaatttgaaataagggaggttgaat 40058039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 20779643 - 20779571
Alignment:
Q  242 tcatctcgcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatt 314  Q
    ||||||| |||||||||||| ||||| |||| |||| ||||| | || | | |||||||||| ||||||||||    
T  20779643 tcatctcacttatatgttgttcaaaatctactcttccatccagtgtataatgttaactcacatttgacacatt 20779571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 149 - 343
Target Start/End: Original strand, 19102631 - 19102825
Alignment:
Q  149 tcatcttaatttcgggacttctaggggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcctttcatctc 248  Q
    ||||| ||| || |||||||| | ||||||||| ||||||||||||| ||||||||||| ||||||  ||||||||||||||||||||||||| ||||||    
T  19102631 tcatcataactttgggacttccaagggatcctatcttgagctttatcaccacattagaccaagagaaaatacacaagtgaaattgatatccttccatctc 19102730  T
Q  249 gcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactctc 343  Q
     |||||||||||| |||||  || | ||| ||||||||||||||||||||||| |||||||||||| |  ||||||||||| |||||||||||||    
T  19102731 acttatatgttgttcaaaatttatcattccatccaatataaatttttaactcatacttgacacattaacacctcttattcaaatttgcaactctc 19102825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 190 - 343
Target Start/End: Original strand, 21467631 - 21467784
Alignment:
Q  190 tttatcgccacattagactaagagacgatacacaagtgaaattgatatcctttcatctcgcttatatgttgtccaaaacctacccttcgatccaatataa 289  Q
    |||||| ||||||||||| ||||||  |||||||||||||||||||||||||||||||| |||||||||||| |||||  || | ||| |||||||||||    
T  21467631 tttatcaccacattagaccaagagaaaatacacaagtgaaattgatatcctttcatctcacttatatgttgttcaaaatttatcattccatccaatataa 21467730  T
Q  290 atttttaactcacacttgacacatttattcctcttattcagatttgcaactctc 343  Q
    |||||||||||| |||||||| ||| |  ||||||||||| ||||| |||||||    
T  21467731 atttttaactcatacttgacaaattaacacctcttattcaaatttgtaactctc 21467784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 357
Target Start/End: Complemental strand, 49881885 - 49881768
Alignment:
Q  242 tcatctcgcttatatgttgtccaaaacctacccttcgatcca--atataaatttttaactcacacttgacacatttattcctcttattcagatttgcaac 339  Q
    ||||||| |||||||||| | ||||| || | |||| |||||  ||||| | |||||||| |||||| ||||||| |   | ||||||||  ||||||||    
T  49881885 tcatctcacttatatgttattcaaaatcttctcttctatccactatatagaattttaacttacacttaacacattaacatcgcttattcaagtttgcaac 49881786  T
Q  340 tctctgtgtccataatta 357  Q
    ||||||||||||| ||||    
T  49881785 tctctgtgtccatgatta 49881768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 1992471 - 1992439
Alignment:
Q  282 caatataaatttttaactcacacttgacacatt 314  Q
    ||||||||| |||||||||||||||||||||||    
T  1992471 caatataaaattttaactcacacttgacacatt 1992439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 20306770 - 20306802
Alignment:
Q  282 caatataaatttttaactcacacttgacacatt 314  Q
    ||||||||| |||||||||||||||||||||||    
T  20306770 caatataaaattttaactcacacttgacacatt 20306802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 40946568 - 40946536
Alignment:
Q  282 caatataaatttttaactcacacttgacacatt 314  Q
    ||||||||| |||||||||||||||||||||||    
T  40946568 caatataaaattttaactcacacttgacacatt 40946536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 149 - 343
Target Start/End: Original strand, 33348071 - 33348265
Alignment:
Q  149 tcatcttaatttcgggacttctaggggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcctttcatctc 248  Q
    ||||| ||| || |||||||| | ||||||||| |||||| |||||| ||||||||||| ||||||  ||||||||||||||||||||||||| ||||||    
T  33348071 tcatcataactttgggacttccaagggatcctatcttgagttttatcaccacattagaccaagagaaaatacacaagtgaaattgatatccttccatctc 33348170  T
Q  249 gcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactctc 343  Q
     |||||||||||| |||||  || | ||| ||||||||||||| ||||||||| |||||||||||| || ||||||||||| |||||||||||||    
T  33348171 acttatatgttgttcaaaatttatcattccatccaatataaatatttaactcatacttgacacattaatacctcttattcaaatttgcaactctc 33348265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 173 - 343
Target Start/End: Complemental strand, 21986421 - 21986251
Alignment:
Q  173 gggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcctttcatctcgcttatatgttgtccaaaacctac 272  Q
    ||||||||| |||||| |||||| ||||||||||| ||||||  |||||||||||||||| |||||||| ||||||  ||||||||||| |||||  ||     
T  21986421 gggatcctatcttgagttttatcaccacattagaccaagagaaaatacacaagtgaaatttatatccttccatctcaattatatgttgttcaaaatttat 21986322  T
Q  273 ccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactctc 343  Q
    | ||| ||||||||||||||||||||||| |||||||||||  |  ||||||||||| |||||||||||||    
T  21986321 cattccatccaatataaatttttaactcatacttgacacatcaacacctcttattcaaatttgcaactctc 21986251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 7428522 - 7428554
Alignment:
Q  282 caatataaatttttaactcacacttgacacatt 314  Q
    ||||||||| |||||||||||||||||||||||    
T  7428522 caatataaaattttaactcacacttgacacatt 7428554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 149 - 343
Target Start/End: Original strand, 30326909 - 30327103
Alignment:
Q  149 tcatcttaatttcgggacttctaggggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcctttcatctc 248  Q
    ||||| ||| || |||||||| | ||||||||| |||||| |||||| ||||||||||| |||| |  ||||||||||||||||||||||||| ||||||    
T  30326909 tcatcataactttgggacttccaagggatcctatcttgagttttatcaccacattagaccaagaaaaaatacacaagtgaaattgatatccttccatctc 30327008  T
Q  249 gcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactctc 343  Q
     |||||||||||| |||||  || | ||  ||||||||||||||||||||||| |||||||||||| |  ||||||||||| |||||||||||||    
T  30327009 acttatatgttgttcaaaatttatcatttcatccaatataaatttttaactcatacttgacacattaacacctcttattcaaatttgcaactctc 30327103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 162 - 342
Target Start/End: Original strand, 23570509 - 23570689
Alignment:
Q  162 gggacttctaggggatcctaccttgagctttatcgccacattagactaagagacgatacacaagtgaaattgatatcctttcatctcgcttatatgttgt 261  Q
    |||||||| | ||||||||| |||||| |||||| ||||| ||||| ||||||  ||||||||||||||||||||||||| ||||||  |||||||||||    
T  23570509 gggacttccaagggatcctatcttgagttttatcaccacaatagaccaagagaaaatacacaagtgaaattgatatccttccatctcatttatatgttgt 23570608  T
Q  262 ccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactct 342  Q
     |||||  || | ||| ||||||||||||||||||||||| |||||||||||| |  ||||||||||| ||||||||||||    
T  23570609 tcaaaatttatcattccatccaatataaatttttaactcatacttgacacattaacacctcttattcaaatttgcaactct 23570689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 357
Target Start/End: Complemental strand, 9025034 - 9024919
Alignment:
Q  242 tcatctcgcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactc 341  Q
    ||||||| |||||||||| | ||||| |||| |||| ||||| |||| | ||||||||||||||||||||||| |   ||||||||||  ||||||||||    
T  9025034 tcatctcacttatatgttattcaaaatctactcttctatccactatataattttaactcacacttgacacattaacatctcttattcaattttgcaactc 9024935  T
Q  342 tctgtgtccataatta 357  Q
    | | | ||||||||||    
T  9024934 tttttatccataatta 9024919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 27593415 - 27593454
Alignment:
Q  16 agaccaaaagtaaaggaatttaaaataagggaggttgaat 55  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  27593415 agaccaaaagtaaaggaatttgaaataagggaggttgaat 27593454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 27593537 - 27593588
Alignment:
Q  310 acatttattcctcttattcagatttgcaactctctgtgtccataattatgtg 361  Q
    |||||||| ||||||||||| |||||||||||| ||||||||||| ||||||    
T  27593537 acatttatacctcttattcaaatttgcaactctatgtgtccataactatgtg 27593588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 357
Target Start/End: Complemental strand, 37122 - 37007
Alignment:
Q  242 tcatctcgcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactc 341  Q
    ||||||| |||||||||| | ||||| |||| |||| ||||| |||| | ||||||||||||||||||||||| |   ||||||||||  ||||||||||    
T  37122 tcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaacatctcttattcaagtttgcaactc 37023  T
Q  342 tctgtgtccataatta 357  Q
    ||||||||||||||||    
T  37022 tctgtgtccataatta 37007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 357
Target Start/End: Complemental strand, 6554623 - 6554508
Alignment:
Q  242 tcatctcgcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactc 341  Q
    ||||||| |||||||||| | ||||| |||| |||| ||||| |||| | ||||||||||||||||||||||| |   ||||||||||  ||||||||||    
T  6554623 tcatctcacttatatgttattcaaaatctactcttccatccactatagaattttaactcacacttgacacattaacatctcttattcaagtttgcaactc 6554524  T
Q  342 tctgtgtccataatta 357  Q
    ||||||||||||||||    
T  6554523 tctgtgtccataatta 6554508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 357
Target Start/End: Complemental strand, 314405 - 314290
Alignment:
Q  242 tcatctcgcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactc 341  Q
    ||||||| |||||||||| | ||||| |||| |||| |||||  ||| | ||||||||||| ||||||||||| |   ||||||||||  ||||||||||    
T  314405 tcatctcacttatatgttattcaaaatctactcttctatccaccatagaattttaactcacgcttgacacattaacatctcttattcaagtttgcaactc 314306  T
Q  342 tctgtgtccataatta 357  Q
    ||||||||||||||||    
T  314305 tctgtgtccataatta 314290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 242 - 357
Target Start/End: Original strand, 833 - 948
Alignment:
Q  242 tcatctcgcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactc 341  Q
    ||||||| |||||||||| | ||||| |||| |||| ||||| |||| |  ||| |||||||||||||||||| |   |||||||||| |||||||||||    
T  833 tcatctcacttatatgttattcaaaatctactcttctatccactatagaacttttactcacacttgacacattaacatctcttattcaaatttgcaactc 932  T
Q  342 tctgtgtccataatta 357  Q
    ||||||||||||||||    
T  933 tctgtgtccataatta 948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 242 - 357
Target Start/End: Original strand, 31965845 - 31965960
Alignment:
Q  242 tcatctcgcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactc 341  Q
    ||||||| |||||||||| | ||||| |||| |||| ||| | |||| | |||||||||| |||||||||||| | | ||||||||||  ||||||||||    
T  31965845 tcatctcacttatatgttattcaaaatctactcttctatctactatagaattttaactcatacttgacacattaacttctcttattcaagtttgcaactc 31965944  T
Q  342 tctgtgtccataatta 357  Q
    ||||||||||||||||    
T  31965945 tctgtgtccataatta 31965960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 24969062 - 24969012
Alignment:
Q  310 acatttattcctcttattcagatttgcaactctctgtgtccataattatgt 360  Q
    |||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  24969062 acatttatacctcttattcaaatttgcaactctatgtgtccataattatgt 24969012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 19040746 - 19040714
Alignment:
Q  282 caatataaatttttaactcacacttgacacatt 314  Q
    ||||||||| |||||||||||||||||||||||    
T  19040746 caatataaaattttaactcacacttgacacatt 19040714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 39839125 - 39839157
Alignment:
Q  282 caatataaatttttaactcacacttgacacatt 314  Q
    ||||||||| |||||||||||||||||||||||    
T  39839125 caatataaaattttaactcacacttgacacatt 39839157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 357
Target Start/End: Original strand, 18457 - 18572
Alignment:
Q  242 tcatctcgcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactc 341  Q
    ||||||| |||||||||| | ||||| |||| |||| ||||| |||| | ||||||||||||||||||  ||| |   ||||||||||  ||||||||||    
T  18457 tcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgactaattaacatctcttattcaagtttgcaactc 18556  T
Q  342 tctgtgtccataatta 357  Q
    ||||||||||||||||    
T  18557 tctgtgtccataatta 18572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1345 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 1897 - 1865
Alignment:
Q  282 caatataaatttttaactcacacttgacacatt 314  Q
    ||||||||| |||||||||||||||||||||||    
T  1897 caatataaaattttaactcacacttgacacatt 1865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 43989731 - 43989699
Alignment:
Q  282 caatataaatttttaactcacacttgacacatt 314  Q
    ||||||||| |||||||||||||||||||||||    
T  43989731 caatataaaattttaactcacacttgacacatt 43989699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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