View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_32 (Length: 349)
Name: NF9349_low_32
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 9498344 - 9498677
Alignment:
| Q |
1 |
tgctgtaatacctcttctcttggctgttaattgtcatttcaagtcatgtagtctacaccactcattcctagtaataacatctgtatccttcttgtacaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
9498344 |
tgctgtaatacctcttctcttggctgttaattgtcatttcaagtcatgtagtctacaccactcattcctattaataacatctgtatccttcttgtataga |
9498443 |
T |
|
| Q |
101 |
tacctattattatgctcgtggtggaagtaccccaggatgttatcacttcatcagctcctacgttacattcattaaaagaagagtcacacagtacaactgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9498444 |
tacctattattatgctcgtggtggaagtaccccaggatgttatcacttcatcagctcctacgttacattcattaaaagaagagtcacacagtacaactgg |
9498543 |
T |
|
| Q |
201 |
tgaacatgttaatgactgtcattctgatattattcagttagaagattcagcattgttgaaaaggtctcaaactaatgtttatgctttgaaagattccaat |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9498544 |
tgaacatgttaatgacagtcattctgatattattcagttagaagattcagcattgttgaaaaggtctcaaactaatgtttatgctttgaaagattccaat |
9498643 |
T |
|
| Q |
301 |
tctgttcgcgttgacatcagcttcaagtccccat |
334 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
9498644 |
tctgttcgcgttgacatcagcttcaagtccccat |
9498677 |
T |
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