View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_35 (Length: 326)
Name: NF9349_low_35
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 10 - 310
Target Start/End: Complemental strand, 3275206 - 3274906
Alignment:
| Q |
10 |
gcagagacgcaatctttcctaacaagccaaatcagtgcagtggaagaaatccactggcacagaagaaaaagatatctgcactgcaaacatcaattttcac |
109 |
Q |
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| T |
3275206 |
gcagagacgcaatctttcctaacaagccaaatcagtgcagtggaagaaatccactggcacagaagaaaaagatatctgcactgcaaacatcaattttcac |
3275107 |
T |
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| Q |
110 |
cgctttgcatttacgttttctactatccaaatggttatgtttagaaattgtaacaaaccagccactctctctctacctcctataacttagtcactaatat |
209 |
Q |
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| T |
3275106 |
cactttgcatttacgttttctactatccaaatggttatgtttagaaattgtaacaaaccagccactctctctctacctcctataacttagtcactaatat |
3275007 |
T |
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| Q |
210 |
tgacttttgactttcatatatcactattaattaattaactaaacaaagtacataataatttatgaattgtaactaattcataatagtattaaccagctac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3275006 |
tgacttttgactttcatatatcactattaattaattaactaaacaaagtacataataatttatgaattgtaactaattcataatagtattaaccagctac |
3274907 |
T |
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| Q |
310 |
t |
310 |
Q |
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| T |
3274906 |
t |
3274906 |
T |
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