View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9349_low_36 (Length: 325)
Name: NF9349_low_36
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_36 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 5476389 - 5476070
Alignment:
| Q |
1 |
gtaagattacacaaggaacatgatagatctctacaagtcagaacccaagacttaaagttcttaaaactattttcatcccatgacggaatatatgtgagag |
100 |
Q |
| |
|
|||||||| |||| ||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5476389 |
gtaagattccacagtgaacatgattgatctctactagacagaacccaagacttaaagttcttaaaactattttcatcccacgacggaatatatgtgagag |
5476290 |
T |
|
| Q |
101 |
tagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgttttgtacttaaagaaaactcatcatgtggaggagtatgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||| |||||||||||| ||||||||||||||||| |
|
|
| T |
5476289 |
tagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcatctcgtgcttcaagaaaactcattatgtggaggagtatgca |
5476190 |
T |
|
| Q |
201 |
gtcaggtaactcactaatcctatttcccgcctctgtttcatcagtcccctacaaagtttccgattggataaataattaatttgacatttatagcataagc |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| |
|
|
| T |
5476189 |
gtcaggtaactcactaatcctatttcctgcctctgtttcatcagtcccctacaaagtttccgattggataaataatcaattagacatatatagcataagc |
5476090 |
T |
|
| Q |
301 |
actactaatacaattattat |
320 |
Q |
| |
|
|||||||||| || |||||| |
|
|
| T |
5476089 |
actactaatataagtattat |
5476070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 310
Target Start/End: Complemental strand, 8403847 - 8403535
Alignment:
| Q |
4 |
agattacacaaggaacatgatagatctctacaagtcagaacccaagacttaaagttcttaaaactattttcatcccatgacggaatatatgtgagagtag |
103 |
Q |
| |
|
||||||| || |||||||||| ||||||||| || |||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| |||||||| |
|
|
| T |
8403847 |
agattacgcagggaacatgattgatctctactagacagaacccaagactgaaagttcttaaaactactttcatcccacgacggaatatatgcgagagtag |
8403748 |
T |
|
| Q |
104 |
tgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgttttgtacttaaagaaaactcatcatgtggaggagtatgcagtc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
8403747 |
tgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgtctcgtgcttcaagaaaactcattatgtggaggagtatgcagtc |
8403648 |
T |
|
| Q |
204 |
aggtaactcactaatcctatttc------ccgcctctgtttcatcagtcccctacaaagtttccgattggataaataattaatttgacatttatagcata |
297 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
8403647 |
aggtaactcaccaatcctatttcttctattttcctctgtttcttcagttccctacaaagtttctcattggataaataattaattaaacatttatagcata |
8403548 |
T |
|
| Q |
298 |
agcactactaata |
310 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
8403547 |
agcactacgaata |
8403535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 8356409 - 8356617
Alignment:
| Q |
15 |
ggaacatgatagatctctacaagtcagaacccaagacttaaagttcttaaaactattttcatcccatgacggaatatatgtgagagtagtgagacgtttg |
114 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| | ||||||||||||||| || | | | |||||||||||||||||| ||| ||| |||||| |
|
|
| T |
8356409 |
ggaacatgaatgatctctacaagacagaacccaagaataaaagttcttaaaact---ttgagctgaagacggaatatatgtgagaatagggaggcgtttg |
8356505 |
T |
|
| Q |
115 |
caaagatccttccatcgtttagacaagatgcaagtccgaacagcgttttgtacttaaagaaaactcatcatgtggaggagtatgcagtcaggtaactcac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | | || | ||| ||||||||||| ||||||| | || |||||| || ||||||| |
|
|
| T |
8356506 |
caaagatccttccatcgtttagacaagatgcaagtccgaacaacatcttctgcttcaagaaaactcaatatgtggaccaataagcagtctggcaactcac |
8356605 |
T |
|
| Q |
215 |
taatcctatttc |
226 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8356606 |
taatcctatttc |
8356617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 9138961 - 9139103
Alignment:
| Q |
84 |
cggaatatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgttttgtacttaaagaaaactcatc |
183 |
Q |
| |
|
|||| ||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| | |||| ||| ||||||||||| |
|
|
| T |
9138961 |
cggagtatatgtgagagtagtgaggcatttgcaaagatccttccaccgtttagacaagatgcaagtccgaacagcatcttgtgcttcaagaaaactcaat |
9139060 |
T |
|
| Q |
184 |
atgtggaggagtatgcagtcaggtaactcactaatcctatttc |
226 |
Q |
| |
|
|||||||| | |||||||||||| ||||||| ||||||||||| |
|
|
| T |
9139061 |
atgtggagcaatatgcagtcaggcaactcacaaatcctatttc |
9139103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 85 - 226
Target Start/End: Original strand, 8359522 - 8359663
Alignment:
| Q |
85 |
ggaatatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgttttgtacttaaagaaaactcatca |
184 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | ||| | ||||||||| | |
|
|
| T |
8359522 |
ggaatatatgtgagagtagggagacgtttgcaaagatccttccatcgtttagacaagatgcaagttcgaacagcgtctcgagctttcaaaaaactcatta |
8359621 |
T |
|
| Q |
185 |
tgtggaggagtatgcagtcaggtaactcactaatcctatttc |
226 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| ||| |||||| |
|
|
| T |
8359622 |
tgtggagcagtatgcagtcaggtaacttactgatcatatttc |
8359663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 82 - 245
Target Start/End: Complemental strand, 8410820 - 8410656
Alignment:
| Q |
82 |
gacggaatatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgttttgtacttaaagaaaactca |
181 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | | || ||| ||||||||||| |
|
|
| T |
8410820 |
gacggagtatatgtgagagtagtgaggcgtttgcaaagatccttccaccgtttagacaagatgcaagtccgaacagcatctcgtgcttcaagaaaactca |
8410721 |
T |
|
| Q |
182 |
tcatgtggaggagtatgcagtcaggtaactcactaatccta-tttcccgcctctgtttcatcagt |
245 |
Q |
| |
|
|| | ||| | || ||||||||| ||||||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
8410720 |
atatctagagcaataagcagtcaggcaactcactaatcctattttcccgcatctgtgtcttcagt |
8410656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 43144836 - 43144976
Alignment:
| Q |
86 |
gaatatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgttttgtacttaaagaaaactcatcat |
185 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||| ||| | || ||| |||||||||||| || |
|
|
| T |
43144836 |
gaatatatttgagagtagtgacacgtttgcaaagatccttccatcgcttagacaagatgcaagttcgaacaacgtctcgtgcttcaagaaaactcattat |
43144935 |
T |
|
| Q |
186 |
gtggaggagtatgcagtcaggtaactcactaatcctatttc |
226 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||| ||||| |
|
|
| T |
43144936 |
atggagcagtatgcagtcgggcaactcactaatccaatttc |
43144976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 8416473 - 8416330
Alignment:
| Q |
82 |
gacggaatatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgttttgtacttaaagaaaactca |
181 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| | | || ||| ||||||||||| |
|
|
| T |
8416473 |
gacggagtatatgtgagagtagtgaggcgtttgcaaagatccttccaccgtttagacaagatacaagtccgaacagcatctcgtgcttcaagaaaactca |
8416374 |
T |
|
| Q |
182 |
tcatgtggaggagtatgcagtcaggtaactcactaatcctattt |
225 |
Q |
| |
|
|| ||||| | || ||||||||| |||||||||||||||||| |
|
|
| T |
8416373 |
atatatggagcaataagcagtcaggcaactcactaatcctattt |
8416330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 8036362 - 8036498
Alignment:
| Q |
89 |
tatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgttttgtacttaaagaaaactcatcatgtg |
188 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| ||||||| | |||| ||| |||||| |||| ||||| |
|
|
| T |
8036362 |
tatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtg |
8036461 |
T |
|
| Q |
189 |
gaggagtatgcagtcaggtaactcactaatcctattt |
225 |
Q |
| |
|
||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
8036462 |
gagcaatatgcagtcaggcaactcactaatcctattt |
8036498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 82 - 223
Target Start/End: Original strand, 8041772 - 8041913
Alignment:
| Q |
82 |
gacggaatatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgttttgtacttaaagaaaactca |
181 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| | | || ||| |||||||| || |
|
|
| T |
8041772 |
gacggagtatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtccgaacagcatctcgtgcttcaagaaaaccca |
8041871 |
T |
|
| Q |
182 |
tcatgtggaggagtatgcagtcaggtaactcactaatcctat |
223 |
Q |
| |
|
||||||| | |||||||||||| || ||||||||||||| |
|
|
| T |
8041872 |
atgtgtggagcaatatgcagtcaggcaaatcactaatcctat |
8041913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University