View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_38 (Length: 317)
Name: NF9349_low_38
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_38 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 52199454 - 52199770
Alignment:
| Q |
1 |
accaaaattctaaaaacgtgttgcatgaaaaagggtgtggaaatataactcatttttatctatcttaaccagtgggcatgcagaattcaaaacatcaaat |
100 |
Q |
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| T |
52199454 |
accaaaattctaaaaacgtgttgcatgaaaaagggtgtggaaatataactcatttttatctatcttaaccagtgggcatgcagaattcaaaacatcaaat |
52199553 |
T |
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| Q |
101 |
gcaaaatggcatgaaagccaatgagaatgaaagtagatattcatattagtgagtaaggtagatattgaaatggatgatggtgtcgactccatccgtggtg |
200 |
Q |
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| T |
52199554 |
gcaaaatggcatgaaagccaatgagaatgaaagtagatattcatattagtgagtaaggtagatatcgaaatggatgatggtgtcgactccatccgtggtg |
52199653 |
T |
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| Q |
201 |
tgctgatcctctttcagcagtgtctcaagagctgcatatccccttgcattctcgtacttaccactcccaccaatcactgcaacttcagatttcagcgatg |
300 |
Q |
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| T |
52199654 |
tgctgatcctctttcagcagtgtctcaagagctgcatatccccttgcattctcgtacttaccactcccaccaatcactgcaacttcagatttcagcgatg |
52199753 |
T |
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| Q |
301 |
ctgtcctgtgaactcca |
317 |
Q |
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| T |
52199754 |
ctgtcctgtgaactcca |
52199770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 280
Target Start/End: Complemental strand, 6735433 - 6735309
Alignment:
| Q |
156 |
aggtagatattgaaatggatgatggtgtcgactccatccgtggtgtgctgatcctctttcagcagtgtctcaagagctgcatatccccttgcattctcgt |
255 |
Q |
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| T |
6735433 |
aggtagatactgaaatgcaagatggtgtcagccccatctgtggtgtgttggtcctccttcagtaggttctcaattgcagcatatcctctagcattctcat |
6735334 |
T |
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| Q |
256 |
acttaccactcccaccaatcactgc |
280 |
Q |
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| T |
6735333 |
acttcccagtcccaccaatcactgc |
6735309 |
T |
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