View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_39 (Length: 312)
Name: NF9349_low_39
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 298
Target Start/End: Original strand, 43221375 - 43221656
Alignment:
| Q |
17 |
tgcttgaaattgcagaaatccttgagcagataaggaagatagcattttgacagcgtattatgatcaatccagccatggtagactgttccagatgctcctt |
116 |
Q |
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| T |
43221375 |
tgcttgaaattgcagaaatccttgagcagataaggaagatagcattttgacagtgtattatgatcaatccagccatggtagactgttccagatgctcctt |
43221474 |
T |
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| Q |
117 |
tccccaaaactttttcaaagtttctggtaattcttaatacttattcatatgtgaattcttgtttcttcgactctaattcctgctttattcttgaattagc |
216 |
Q |
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| T |
43221475 |
tccctataaccttctcaaagtttctggtaattcttaatacttcttcataggtgaattcttgtttcttcgactctagttcctgctttattcttgaattagc |
43221574 |
T |
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| Q |
217 |
acccagcttgatctccttatgggaaactgggaagaagcaaacacagtttttattcttgaattagtattatatgtgtttgagt |
298 |
Q |
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| T |
43221575 |
acccagcttgatcaccttatgggaaactgggaagaagcaaacacagtttttattcttgaattagtattatatgtgtttgagt |
43221656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 43175564 - 43175348
Alignment:
| Q |
17 |
tgcttgaaattgcagaaatccttgagcagataaggaagatagcattttgacagc-------gtattatgatcaatccagccatggtagactgttccagat |
109 |
Q |
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| T |
43175564 |
tgcttgaaattgcagatatccttgagctgatgaggaagatagcattttgacagctacctcggtattatgatcaatccagccatggtagactgttccagat |
43175465 |
T |
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| Q |
110 |
gctcctttccccaaaactttttcaaagtttctggtaattcttaatacttattcatatgtgaattcttgtttcttcgactctaattcctgctttattcttg |
209 |
Q |
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| T |
43175464 |
gctcctttccccacaaccttttcaaagtttctggtaatgcttaatacttcttcatagctgaattcttgtttctttgactctagttcctgctttattcttg |
43175365 |
T |
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| Q |
210 |
aattagcacccagcttg |
226 |
Q |
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| T |
43175364 |
aataagcacccagcttg |
43175348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 43166578 - 43166318
Alignment:
| Q |
17 |
tgcttgaaattgcagaaatccttgagcagataaggaagatagcattttgacagc-------gtattatgatcaatccagccatggtagactgttccagat |
109 |
Q |
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|||||||||||||||| |||||||||| ||| ||||||| |||||||||||||| |||| ||| ||||||||||| |||||||||||||||||| |
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| T |
43166578 |
tgcttgaaattgcagatatccttgagctgatgaggaagacagcattttgacagctacctcagtatcatggtcaatccagccgtggtagactgttccagat |
43166479 |
T |
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| Q |
110 |
gctcctttccccaaaactttttcaaagtttctggtaattcttaatacttattcatatgtgaattcttgtttcttcgactctaattcctgctttattcttg |
209 |
Q |
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| T |
43166478 |
gctcctttccccaaaaccgtcttaaagtttctggtaattctgtatacttcttcgtagcggaattcttgtttttttgactcgagttcctgctttattcttg |
43166379 |
T |
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| Q |
210 |
aattagcacccagcttgatctccttatgggaaactgggaagaagcaaacacagtttttattc |
271 |
Q |
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|||||||||||||| ||||| |||||| ||||||||||||||||||||| ||| |||||||| |
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| T |
43166378 |
aattagcacccagcatgatcaccttattggaaactgggaagaagcaaac-cagattttattc |
43166318 |
T |
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