View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_4 (Length: 599)
Name: NF9349_low_4
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_4 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 178 - 599
Target Start/End: Original strand, 35040165 - 35040585
Alignment:
| Q |
178 |
ttttgcaggcactaattctagcaggtactagacactaccgcagcgacattgacctggtctgtttctttacttcttaacaatcctgaagttttaaacaaag |
277 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35040165 |
ttttgcaggcactaattctagcaggtac-agacactaccgcagcgacattgacctggtctgtttctttacttcttaacaatcctgaagttttaaacaaag |
35040263 |
T |
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| Q |
278 |
ccattcaagaattagatacacaaattggtatggaaaatatggcaatagaatcagattttgcaaagtttgaatatctcaaagccattatcaaggaaacatt |
377 |
Q |
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| T |
35040264 |
ccattcaagaattagatacacaaattggtatggaaaatatggcaatagaatcagattttgcaaagtttgaatatctcaaagccattatcaaggaaacatt |
35040363 |
T |
|
| Q |
378 |
gcgtctgtacccagccgcaccactcgatgtgcctcatgagtccattgaagattgtatcgttggtggataccacgtgccagccggtacgcgtctcataact |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35040364 |
gcgtctgtacccagccgcaccactcgatgtgcctcatgagtccattgaagattgtaccgttggtggataccacgtgccagccggtacgcgtctcataact |
35040463 |
T |
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| Q |
478 |
aacctttcgaaacttcaacgagatccaatgttatattcggatccgttggagtttcgaccagagagattcctcacaacgaacaaagatgtcgatgtcaagg |
577 |
Q |
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| T |
35040464 |
aacctttcgaaacttcaacgagatccaatgttatattcggatccgcatgagtttcgaccagagagattccttacaacgaacaaagatgtcgatgtcaagg |
35040563 |
T |
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| Q |
578 |
gccaacattttgagttgattcc |
599 |
Q |
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| T |
35040564 |
gccaacattttgagttgattcc |
35040585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 178 - 599
Target Start/End: Original strand, 35032148 - 35032568
Alignment:
| Q |
178 |
ttttgcaggcactaattctagcaggtactagacactaccgcagcgacattgacctggtctgtttctttacttcttaacaatcctgaagttttaaacaaag |
277 |
Q |
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||||||||||| |||||||||| | ||| ||| |||||||||| |||||||| ||||| | ||||||||||||||||||||||||||| ||||||||| |
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| T |
35032148 |
ttttgcaggcattaattctagcggctac-agatactaccgcaggaacattgacatggtcactatctttacttcttaacaatcctgaagttctaaacaaag |
35032246 |
T |
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| Q |
278 |
ccattcaagaattagatacacaaattggtatggaaaatatggcaatagaatcagattttgcaaagtttgaatatctcaaagccattatcaaggaaacatt |
377 |
Q |
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| T |
35032247 |
ccattcaagaattagatacacaaattggtatggaaaatatggcaataaaatcagatttggcaaagttggagtatctccaagccattatcaaggaaacatt |
35032346 |
T |
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| Q |
378 |
gcgtctgtacccagccgcaccactcgatgtgcctcatgagtccattgaagattgtatcgttggtggataccacgtgccagccggtacgcgtctcataact |
477 |
Q |
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|||| |||||||| | | ||||||| || ||||||||||||| ||||| ||||||| | |||||||||||||||||||||| || ||| ||||| |||| |
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| T |
35032347 |
gcgtttgtacccacctggaccactcaatttgcctcatgagtctattgaggattgtaccattggtggataccacgtgccagctggcacgtgtctcctaacc |
35032446 |
T |
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| Q |
478 |
aacctttcgaaacttcaacgagatccaatgttatattcggatccgttggagtttcgaccagagagattcctcacaacgaacaaagatgtcgatgtcaagg |
577 |
Q |
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|||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||| | |||||| |||| ||||| |||||||||| |
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| T |
35032447 |
aacctttcaaaacttcaacgagatccaatattatattcagatccgttggagtttcaaccagagagatttcacacaacacacaaggatgttgatgtcaagg |
35032546 |
T |
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| Q |
578 |
gccaacattttgagttgattcc |
599 |
Q |
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| T |
35032547 |
gccaacattttgagttgattcc |
35032568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 178 - 599
Target Start/End: Original strand, 35026202 - 35026622
Alignment:
| Q |
178 |
ttttgcaggcactaattctagcaggtactagacactaccgcagcgacattgacctggtctgtttctttacttcttaacaatcctgaagttttaaacaaag |
277 |
Q |
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|||||||||||||||||||||||| ||| ||||||||| |||| |||||||| ||| || | ||||||||||||||||||| ||| || ||||||||| |
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| T |
35026202 |
ttttgcaggcactaattctagcagctac-agacactacagcaggaacattgacttggactctatctttacttcttaacaatcgtgaggtcctaaacaaag |
35026300 |
T |
|
| Q |
278 |
ccattcaagaattagatacacaaattggtatggaaaatatggcaatagaatcagattttgcaaagtttgaatatctcaaagccattatcaaggaaacatt |
377 |
Q |
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|||||| |||||||||||||||||||||| |||||| ||||||||| || ||||||| | ||||| || ||||| ||||||||||||| |||||||| |
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| T |
35026301 |
tcattcatgaattagatacacaaattggtaaggaaaagatggcaatacaaacagatttgacgaagttggagtatcttcaagccattatcaaagaaacatt |
35026400 |
T |
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| Q |
378 |
gcgtctgtacccagccgcaccactcgatgtgcctcatgagtccattgaagattgtatcgttggtggataccacgtgccagccggtacgcgtctcataact |
477 |
Q |
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|||||| |||||| | |||||||| || ||||||| ||||| ||||| |||||| | |||||||||||||||||||||| |||||||||||| |||| |
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| T |
35026401 |
gcgtctatacccaccagcaccactgaatttgcctcacgagtctattgagaattgtaccattggtggataccacgtgccagctggtacgcgtctcctaacc |
35026500 |
T |
|
| Q |
478 |
aacctttcgaaacttcaacgagatccaatgttatattcggatccgttggagtttcgaccagagagattcctcacaacgaacaaagatgtcgatgtcaagg |
577 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||| | |
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| T |
35026501 |
aacctttcgaagcttcaacgagatccaatgttatattcggatccgttggagtttcgaccagaaagattcctcacaacacacaaggatgttgatgtcaaag |
35026600 |
T |
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| Q |
578 |
gccaacattttgagttgattcc |
599 |
Q |
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| T |
35026601 |
gccaacatttcgagttgattcc |
35026622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 283 - 599
Target Start/End: Original strand, 35047891 - 35048207
Alignment:
| Q |
283 |
caagaattagatacacaaattggtatggaaaatatggcaatagaatcagattttgca-aagtttgaatatctcaaagccattatcaaggaaacattgcgt |
381 |
Q |
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||||||||||||||||||||||||| ||||| |||| ||| ||||||||||| ||| ||||| || ||||| |||| ||||||||||||||| |||| |
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| T |
35047891 |
caagaattagatacacaaattggtagagaaaagatggtaatggaatcagattt-gcacaagttagagtatcttcaagctattatcaaggaaacaatgcgc |
35047989 |
T |
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| Q |
382 |
ctgtacccagccgcaccactcgatgtgcctcatgagtccattgaagattgtatcgttggtggataccacgtgccagccggtacgcgtctcataactaacc |
481 |
Q |
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||| ||| ||| ||||| |||||||||||||||||| ||||||||||| | |||||||||| || ||||| || ||||| |||||| | || ||| |
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| T |
35047990 |
ttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgtaccattggtggatatcatgtgcccgctggtactcgtctccttacaaaca |
35048089 |
T |
|
| Q |
482 |
tttcgaaacttcaacgagatccaatgttatattcggatccgttggagtttcgaccagagagattcctcacaacgaacaaagatgtcgatgtcaagggcca |
581 |
Q |
| |
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|||| |||||||| | |||||| | ||||||| |||| | ||||||||||||||||||||||||||||| |||| ||| | ||| |||| ||||| |
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| T |
35048090 |
tttcaaaacttcagcaagatccgtttatatattctaatccactagagtttcgaccagagagattcctcacaacacacaaggatattgatctcaaaggcca |
35048189 |
T |
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| Q |
582 |
acattttgagttgattcc |
599 |
Q |
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|||||||||||||||||| |
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| T |
35048190 |
acattttgagttgattcc |
35048207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 35039999 - 35040105
Alignment:
| Q |
12 |
attatactctgctaaggggttacagcgaaagatgaaggtataaacaactgaatgtcctaatagannnnnnnagttgcgacattataaatactcaactttc |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35039999 |
attatactctgctaaggggttacagcgaaagatgaaggtataaacaactgaacgtcctaatagatttttttagttgcgacattataaatactcaactttc |
35040098 |
T |
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| Q |
112 |
aattatc |
118 |
Q |
| |
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| ||||| |
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| T |
35040099 |
agttatc |
35040105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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