View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9349_low_43 (Length: 292)
Name: NF9349_low_43
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_43 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 41 - 279
Target Start/End: Complemental strand, 378506 - 378271
Alignment:
| Q |
41 |
ttcaaacgctcgatgagtcaactttggagcaatacagaaagaaaatgcttcaacatacttcaatcatcatcaaaaaccaaaacttttaaaacattacttc |
140 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
378506 |
ttcaaacgctcgatgagtcaactatggagcaatacagaaagaaaatgcttcaacatacttcaatcatca---aaaaccaaaacttttaaaacattacttg |
378410 |
T |
|
| Q |
141 |
aaatccacgctttcattctccgtaactctcttcataacaatcttcaccttctcaccaaattcatctcttcttccacttccctcgctctttctactcctcg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
378409 |
aaatccacgctttcattctccgtaactctcttcataacaatcttcaccttcttaccaaattcatctcttcttccacttccctcgctctttctactcctcg |
378310 |
T |
|
| Q |
241 |
cagaaaccacgccgtttccattgttcaacacgctcgtct |
279 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
378309 |
cagaaacgacgccgtttccattgttcaacacgctcgtct |
378271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 1607004 - 1606913
Alignment:
| Q |
128 |
aaaacattacttcaaatccacgctttcattctccgtaactctcttcataacaatcttcaccttctcaccaaattcatctcttcttccacttc |
219 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| | |||| | |||| || ||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
1607004 |
aaaacattacttgaaatccacgctttctttcttcaaaactattttcaaaaaaatctcaaccctctcaccaaattcatctcttcttccacttc |
1606913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 1107714 - 1107664
Alignment:
| Q |
169 |
tcttcataacaatcttcaccttctcaccaaattcatctcttcttccacttc |
219 |
Q |
| |
|
|||||| |||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
1107714 |
tcttcaaaacaatctcaaccctctcaccaaattcatctcttcttccacttc |
1107664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University