View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_47 (Length: 260)
Name: NF9349_low_47
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 48236690 - 48236946
Alignment:
| Q |
1 |
aggatataaggacggcttggtggctaaggaggtcgaaggctcaaacacagctctcagcataatactaattattactaacagtactagcattgactgttta |
100 |
Q |
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| T |
48236690 |
aggatataaggacggcttggtggctaaggaggtcgaaggctcaaacacagctctcagcataatactaattattactaacagtactaccattgactgttta |
48236789 |
T |
|
| Q |
101 |
ggaaaaaactatccaaccaatagggtcgaagtatttctttgagcaatgaaaagagcaaacctatcacaaccaataaagtaccaacacagatactacacta |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48236790 |
ggaaaaaactatccaaccaatagg-tcgaagtatttctttgagcaatgaaaagagcaaacctattacaaccaataaagtaccaacacagatactacacta |
48236888 |
T |
|
| Q |
201 |
acagtacacaccattaatagttggtctagtccttgacacgggtcgaacaccaaactcg |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48236889 |
acagtacacaccattaatagttggtctagtccttgacacgggtcgaacaccagactcg |
48236946 |
T |
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