View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9349_low_49 (Length: 259)

Name: NF9349_low_49
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9349_low_49
NF9349_low_49
[»] scaffold0268 (1 HSPs)
scaffold0268 (111-251)||(18950-19090)
[»] chr8 (5 HSPs)
chr8 (111-251)||(9866132-9866272)
chr8 (111-179)||(130109-130177)
chr8 (106-157)||(32057260-32057311)
chr8 (128-157)||(9875166-9875195)
chr8 (110-151)||(9875372-9875413)
[»] scaffold0031 (1 HSPs)
scaffold0031 (117-251)||(91205-91339)
[»] chr6 (5 HSPs)
chr6 (117-249)||(24016697-24016829)
chr6 (111-251)||(2196936-2197076)
chr6 (117-251)||(629814-629949)
chr6 (117-157)||(31098706-31098746)
chr6 (110-157)||(1569577-1569624)
[»] chr5 (2 HSPs)
chr5 (111-251)||(22292705-22292845)
chr5 (111-176)||(13579015-13579080)
[»] scaffold1603 (1 HSPs)
scaffold1603 (117-251)||(192-326)
[»] chr7 (7 HSPs)
chr7 (111-251)||(13926055-13926195)
chr7 (111-157)||(19794397-19794443)
chr7 (188-251)||(38656968-38657032)
chr7 (110-157)||(15746687-15746734)
chr7 (111-157)||(13931851-13931897)
chr7 (188-251)||(8943032-8943096)
chr7 (109-157)||(21460128-21460176)
[»] chr1 (6 HSPs)
chr1 (50-110)||(5242502-5242562)
chr1 (188-251)||(27052624-27052688)
chr1 (100-157)||(51311643-51311700)
chr1 (111-157)||(38634964-38635010)
chr1 (108-157)||(48734907-48734956)
chr1 (117-157)||(8674693-8674733)
[»] chr2 (4 HSPs)
chr2 (188-251)||(29075916-29075980)
chr2 (111-157)||(12524142-12524188)
chr2 (188-244)||(15573347-15573404)
chr2 (108-157)||(33473862-33473911)
[»] chr3 (5 HSPs)
chr3 (109-160)||(31893454-31893505)
chr3 (115-157)||(44308428-44308470)
chr3 (188-251)||(11758943-11759007)
chr3 (111-151)||(34134118-34134158)
chr3 (188-251)||(52616421-52616485)
[»] chr4 (2 HSPs)
chr4 (198-251)||(13736611-13736665)
chr4 (111-151)||(28804180-28804220)
[»] scaffold0604 (1 HSPs)
scaffold0604 (112-157)||(7217-7262)


Alignment Details
Target: scaffold0268 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 111 - 251
Target Start/End: Complemental strand, 19090 - 18950
Alignment:
Q  111 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtaggtaaattacctgctagaatattttaatg 210  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19090 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggaggtaaattacctgctagaatattttaatg 18991  T
Q  211 tttcatattatattgtaaaatattcatttattgtctctgct 251  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  18990 tttcatattatattgtaaaatattcatttattgtttctgct 18950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 111 - 251
Target Start/End: Original strand, 9866132 - 9866272
Alignment:
Q  111 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtaggtaaattacctgctagaatattttaatg 210  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  9866132 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaatttttccatggaaggacagctgtaggtaaatgacctgctagaatattttaatg 9866231  T
Q  211 tttcatattatattgtaaaatattcatttattgtctctgct 251  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  9866232 tttcatattatattgtaaaatattcatttattgtttctgct 9866272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 130177 - 130109
Alignment:
Q  111 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctg 179  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  130177 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggatagctg 130109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 32057260 - 32057311
Alignment:
Q  106 tatacggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 157  Q
    |||| ||||| |||||||||||||||  || |||||||||||||||||||||    
T  32057260 tatagggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaa 32057311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 157
Target Start/End: Complemental strand, 9875195 - 9875166
Alignment:
Q  128 acaaatgatagatttgtgcaccatgcacaa 157  Q
    ||||||||||||||||||||||||||||||    
T  9875195 acaaatgatagatttgtgcaccatgcacaa 9875166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 9875413 - 9875372
Alignment:
Q  110 cggtggtatttagcatgcacaaatgatagatttgtgcaccat 151  Q
    |||||| |||||||||||||||||| || |||||||||||||    
T  9875413 cggtggcatttagcatgcacaaatgttaaatttgtgcaccat 9875372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 117 - 251
Target Start/End: Complemental strand, 91339 - 91205
Alignment:
Q  117 atttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtaggtaaattacctgctagaatattttaatgtttcat 216  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||||||   |||    
T  91339 atttagtatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtcggtaatttacctgctggattattttaatgaaacat 91240  T
Q  217 attatattgtaaaatattcatttattgtctctgct 251  Q
    |||||||||||||||||||||||||||| ||||||    
T  91239 attatattgtaaaatattcatttattgtttctgct 91205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 117 - 249
Target Start/End: Original strand, 24016697 - 24016829
Alignment:
Q  117 atttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtaggtaaattacctgctagaatattttaatgtttcat 216  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||| || ||||||||||   |||    
T  24016697 atttagtatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgacggtaatttacctgctggattattttaatgaaacat 24016796  T
Q  217 attatattgtaaaatattcatttattgtctctg 249  Q
    |||||||||||||||||||||||||||| ||||    
T  24016797 attatattgtaaaatattcatttattgtttctg 24016829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 111 - 251
Target Start/End: Complemental strand, 2197076 - 2196936
Alignment:
Q  111 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtaggtaaattacctgctagaatattttaatg 210  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||  ||||| |||||| || |||||||||||||    
T  2197076 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaatttttgtatggaaggacagctggcggtaatttacctactggaatattttaatg 2196977  T
Q  211 tttcatattatattgtaaaatattcatttattgtctctgct 251  Q
       ||||||||||||||||||||||||||||||| ||||||    
T  2196976 aaacatattatattgtaaaatattcatttattgtttctgct 2196936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 117 - 251
Target Start/End: Original strand, 629814 - 629949
Alignment:
Q  117 atttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtaggtaaattacctgctagaatattttaatgtttcat 216  Q
    |||||| ||||||||||   ||||||||||||||||||||||||| |||||||||||||||||  ||||| ||||||||| ||||||||||||     ||    
T  629814 atttagaatgcacaaatacaagatttgtgcaccatgcacaatttttccatggaaggacagctggcggtaatttacctgctggaatattttaatcaaaaat 629913  T
Q  217 attatattgtaaaatatt-catttattgtctctgct 251  Q
    ||||||||||| |||||| |||||||||| ||||||    
T  629914 attatattgtataatattccatttattgtttctgct 629949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 31098706 - 31098746
Alignment:
Q  117 atttagcatgcacaaatgatagatttgtgcaccatgcacaa 157  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  31098706 atttagcatgcacaaattataaatttgtgcaccatgcacaa 31098746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 1569577 - 1569624
Alignment:
Q  110 cggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 157  Q
    |||||| |||||||||||||||  || |||||||||||||||||||||    
T  1569577 cggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaa 1569624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 111 - 251
Target Start/End: Complemental strand, 22292845 - 22292705
Alignment:
Q  111 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtaggtaaattacctgctagaatattttaatg 210  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    |||||||| |||||||||||||    
T  22292845 ggtggcatttagtatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtttcatacctgctggaatattttaatg 22292746  T
Q  211 tttcatattatattgtaaaatattcatttattgtctctgct 251  Q
       ||||||||||||||||||||||||||||||| ||||||    
T  22292745 aaacatattatattgtaaaatattcatttattgtttctgct 22292705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 13579080 - 13579015
Alignment:
Q  111 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacag 176  Q
    ||||| |||||| |||||||||||  ||||||||||| ||||||||| ||   |||||||||||||    
T  13579080 ggtggcatttagtatgcacaaatgcaagatttgtgcatcatgcacaacttgtgcatggaaggacag 13579015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1603 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 117 - 251
Target Start/End: Complemental strand, 326 - 192
Alignment:
Q  117 atttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtaggtaaattacctgctagaatattttaatgtttcat 216  Q
    |||||| ||||||||||   | |||||||||||||||||||||||||||||||| ||||||||  ||||| |||||| || |||||||||||||   |||    
T  326 atttagaatgcacaaatataaaatttgtgcaccatgcacaattttcccatggaatgacagctggtggtaatttaccttctggaatattttaatgaaacat 227  T
Q  217 attatattgtaaaatattcatttattgtctctgct 251  Q
    |||||||||||||||||||||||||||| ||||||    
T  226 attatattgtaaaatattcatttattgtttctgct 192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 251
Target Start/End: Complemental strand, 13926195 - 13926055
Alignment:
Q  111 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtaggtaaattacctgctagaatattttaatg 210  Q
    ||||| |||||| ||||||||||   ||||||||||||||||||||| |||   |||||||||||||||  ||||| ||||||||| ||||||||||||     
T  13926195 ggtggcatttagaatgcacaaatacaagatttgtgcaccatgcacaacttttgtatggaaggacagctggcggtaatttacctgctggaatattttaata 13926096  T
Q  211 tttcatattatattgtaaaatattcatttattgtctctgct 251  Q
       ||||||||||| ||||||||||||||||||| ||||||    
T  13926095 aaacatattatattataaaatattcatttattgtttctgct 13926055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 19794397 - 19794443
Alignment:
Q  111 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 157  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||||||    
T  19794397 ggtggcatttagcatgcacaattgataaatttgtgcaccatgcacaa 19794443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 38656968 - 38657032
Alignment:
Q  188 ttacctgctagaatattttaatgtttcatattatattgtaaaata-ttcatttattgtctctgct 251  Q
    ||||||||| |||||||||||||   ||||||||||||||||||| || ||||||||| ||||||    
T  38656968 ttacctgctggaatattttaatgaaacatattatattgtaaaatattttatttattgtttctgct 38657032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 15746734 - 15746687
Alignment:
Q  110 cggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 157  Q
    |||||| |||||||||||||||  || |||||||||||||||||||||    
T  15746734 cggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaa 15746687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 13931897 - 13931851
Alignment:
Q  111 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 157  Q
    ||||| |||||||||||||||  || |||||||||||||||||||||    
T  13931897 ggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaa 13931851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 8943032 - 8943096
Alignment:
Q  188 ttacctgctagaatattttaatgtttcatattatattgtaaaatatt-catttattgtctctgct 251  Q
    ||||||||| ||||||||||||     |||||||||||||||||||| |||||||||| ||||||    
T  8943032 ttacctgctggaatattttaatcaaaaatattatattgtaaaatattccatttattgtttctgct 8943096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 21460128 - 21460176
Alignment:
Q  109 acggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 157  Q
    ||||||| |||||| ||||||||||| || ||||||| |||||||||||    
T  21460128 acggtggcatttaggatgcacaaatgttaaatttgtgtaccatgcacaa 21460176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 5242502 - 5242562
Alignment:
Q  50 cctttgaatttgaaatgtaatttcttttgatttgttgtcattgaattgtattgatatatac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||    
T  5242502 cctttgaatttgaaatgtaatttcttttgatttgttgtcattgcattgaatcgatatatac 5242562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 27052688 - 27052624
Alignment:
Q  188 ttacctgctagaatattttaatgtttcatattatattgtaaaatatt-catttattgtctctgct 251  Q
    ||||||||| |||||||||||||   ||||||||||||||||||||| |||||||||| ||||||    
T  27052688 ttacctgctggaatattttaatgaaacatattatattgtaaaatattccatttattgtttctgct 27052624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 51311700 - 51311643
Alignment:
Q  100 ttgatatatacggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 157  Q
    |||||||||| ||||| ||||||||||||||||  ||| ||||||||||||| |||||    
T  51311700 ttgatatatatggtggcatttagcatgcacaaagtataaatttgtgcaccatacacaa 51311643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 38635010 - 38634964
Alignment:
Q  111 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 157  Q
    ||||| ||||||||||||||| ||||| ||||||||| |||||||||    
T  38635010 ggtggcatttagcatgcacaattgataaatttgtgcatcatgcacaa 38634964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 48734907 - 48734956
Alignment:
Q  108 tacggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 157  Q
    |||||||| |||||| ||||||||||   |||||||||||||||||||||    
T  48734907 tacggtggcatttagaatgcacaaatataagatttgtgcaccatgcacaa 48734956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 8674733 - 8674693
Alignment:
Q  117 atttagcatgcacaaatgatagatttgtgcaccatgcacaa 157  Q
    |||||| ||||||||||| |||||||||||||||| |||||    
T  8674733 atttaggatgcacaaatgttagatttgtgcaccatacacaa 8674693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 29075980 - 29075916
Alignment:
Q  188 ttacctgctagaatattttaatgtttcatattatattgtaaaatatt-catttattgtctctgct 251  Q
    ||||||||| |||||||||||||   ||||||||||||||||||||| |||||||||| ||||||    
T  29075980 ttacctgctggaatattttaatgaaacatattatattgtaaaatattccatttattgtttctgct 29075916  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 12524188 - 12524142
Alignment:
Q  111 ggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 157  Q
    |||||||||||||||||||||  || |||||||||||||||||||||    
T  12524188 ggtggtatttagcatgcacaagagaaagatttgtgcaccatgcacaa 12524142  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 15573404 - 15573347
Alignment:
Q  188 ttacctgctagaatattttaatgtttcatattatattgtaaaatatt-catttattgt 244  Q
    ||||||||| |||||||||||||   ||||||||||||||||||||| ||||||||||    
T  15573404 ttacctgctggaatattttaatgaaacatattatattgtaaaatattccatttattgt 15573347  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 33473862 - 33473911
Alignment:
Q  108 tacggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 157  Q
    |||||||| |||||| |||||||| || || |||||||||||||||||||    
T  33473862 tacggtggcatttagtatgcacaagtgttaaatttgtgcaccatgcacaa 33473911  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 31893505 - 31893454
Alignment:
Q  109 acggtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaattt 160  Q
    ||||||| |||||| ||||||||||   ||||||||||||||||||||||||    
T  31893505 acggtggcatttagaatgcacaaatacaagatttgtgcaccatgcacaattt 31893454  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 44308428 - 44308470
Alignment:
Q  115 gtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 157  Q
    |||||||| ||||||||||| |||||||||||||||| |||||    
T  44308428 gtatttaggatgcacaaatgttagatttgtgcaccatacacaa 44308470  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 11758943 - 11759007
Alignment:
Q  188 ttacctgctagaatattttaatgtttcatattatattgtaaaatatt-catttattgtctctgct 251  Q
    ||||||||| ||| |||||||||   ||||| ||||||||||||||| |||||||||| ||||||    
T  11758943 ttacctgctggaacattttaatgaaacatataatattgtaaaatattccatttattgtttctgct 11759007  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 34134158 - 34134118
Alignment:
Q  111 ggtggtatttagcatgcacaaatgatagatttgtgcaccat 151  Q
    ||||| |||||||||||||||||| || |||||||||||||    
T  34134158 ggtggcatttagcatgcacaaatgttaaatttgtgcaccat 34134118  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 52616485 - 52616421
Alignment:
Q  188 ttacctgctagaatattttaatgtttcatattatattgtaaaatatt-catttattgtctctgct 251  Q
    ||||||||| |||||||||||||    ||||||||||||| |||||| |||||||||| ||||||    
T  52616485 ttacctgctggaatattttaatgaaaaatattatattgtataatattccatttattgtttctgct 52616421  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 13736611 - 13736665
Alignment:
Q  198 gaatattttaatgtttcatattatattgtaaaatatt-catttattgtctctgct 251  Q
    |||||||||||||   ||||||||||||||||||||| |||||||||| ||||||    
T  13736611 gaatattttaatgaaacatattatattgtaaaatattccatttattgtttctgct 13736665  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 28804220 - 28804180
Alignment:
Q  111 ggtggtatttagcatgcacaaatgatagatttgtgcaccat 151  Q
    ||||| ||||| ||||||||||||||| |||||||||||||    
T  28804220 ggtggcatttaacatgcacaaatgataaatttgtgcaccat 28804180  T

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Target: scaffold0604 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 7217 - 7262
Alignment:
Q  112 gtggtatttagcatgcacaaatgatagatttgtgcaccatgcacaa 157  Q
    |||| |||||| |||||||||||  |||||||||||||||||||||    
T  7217 gtggcatttagtatgcacaaatgtaagatttgtgcaccatgcacaa 7262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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