View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9349_low_5 (Length: 531)
Name: NF9349_low_5
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 470
Target Start/End: Complemental strand, 3660104 - 3659641
Alignment:
| Q |
19 |
gtgatgatgatgagaagaagaagctgttgaagaatttgagggggagagttgagaagattagcaaattgtgtaaggtttatggagatgatgaggaaggttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3660104 |
gtgatgatgatgagaagaagaagctgttgaagaatttgagggggagagttgagaagattagcaaattgtgtaaggtttatggagatgatgaggaaggttt |
3660005 |
T |
|
| Q |
119 |
agagaatgaggagagcgttcatgat------------tatgatgacgatggagtaactgatgttgtggtcgctagaagggatgggaacaaaaatggtgtc |
206 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3660004 |
agagaatgaggagagcgttcatgatgatgatgatgattatgatgacgatggagtaactgatgttgtggtcgctagaagggatgggaacaaaaatggtgtc |
3659905 |
T |
|
| Q |
207 |
tttgttcaaaggcaagtaattcaacctagagtgaagaagagtgtgagatttgcagagaatggtaatgtttgtgaggtttatagcacaagaacttgtgaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3659904 |
tttgttcaaaggcaagtaattcaacctagagtgaagaagagtgtgagatttgcagagaatggtaatgtttgtgaggtttatagcacaagaacttgtgaat |
3659805 |
T |
|
| Q |
307 |
cagatggaagttcctcaaatgatgaccaaggcgaggttttggagaatagaaagtttgcagttgtagatgttgtggactcttatcagggtgttgaagatga |
406 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3659804 |
cggatggaagttcctcaaatgatgaccaaggcgaggttttggagaatagaaagtttgcagttgtagatgttgtggactcttctcagggtgttgaagatga |
3659705 |
T |
|
| Q |
407 |
cgaggaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtg |
470 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3659704 |
cgaggaagtgctggtgggggacagtggaggatcaacacgtagtagcgatgacggagatatagtg |
3659641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 411 - 517
Target Start/End: Complemental strand, 3653449 - 3653343
Alignment:
| Q |
411 |
gaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttct |
510 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3653449 |
gaagttctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagtagtttcaagcacaccaagagaagattctgttct |
3653350 |
T |
|
| Q |
511 |
ctgctcc |
517 |
Q |
| |
|
||||||| |
|
|
| T |
3653349 |
ctgctcc |
3653343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 511
Target Start/End: Complemental strand, 3657452 - 3657352
Alignment:
| Q |
411 |
gaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttct |
510 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| ||||| || | | | |||||| | |||||||||||||||| | ||| || |||||| ||||||||| |
|
|
| T |
3657452 |
gaagtgctggtggaggacggtgaaggatcaacgcgtagcagtggttatggagattgactgaaagagcagtttcaggtacatcatgagaagcttctgttct |
3657353 |
T |
|
| Q |
511 |
c |
511 |
Q |
| |
|
| |
|
|
| T |
3657352 |
c |
3657352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 517
Target Start/End: Complemental strand, 3659640 - 3659609
Alignment:
| Q |
486 |
gcacaccaagagaagattctgttctctgctcc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
3659640 |
gcacaccaagagaagattctgttctctgctcc |
3659609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University