View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_52 (Length: 257)
Name: NF9349_low_52
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 249
Target Start/End: Complemental strand, 44191984 - 44191759
Alignment:
| Q |
23 |
gatttagactttaggtaacttgtgaacattcagcaataaccttaagtaaaacttctcatcagaaatagtaattggagacatagtaattacaatttagctt |
122 |
Q |
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| T |
44191984 |
gatttagactttaggtaacttgtgaacattcagcaataaccttaagtaaaacttctcatcagaaatagtaattggagacatagtaattacaatttagctt |
44191885 |
T |
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| Q |
123 |
tatatctcctagtttacgtgtataaaagaaaggattatgcatcagcaaattgttcacatcagtttgaaaaggttcaaatatttgacaaagtacttaagag |
222 |
Q |
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| T |
44191884 |
tatatctcctagtttacgtgtataaaagaaaggattatgcatcagcaaattgttcacatcagtttgaaaaggttcaaatatttgacaaagtactt-tgag |
44191786 |
T |
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| Q |
223 |
tttaccaataaagtaattgtctctgct |
249 |
Q |
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||||| |||||||||||||||| |||| |
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| T |
44191785 |
tttactaataaagtaattgtctttgct |
44191759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 44203177 - 44203041
Alignment:
| Q |
112 |
caatttagctttatatctcctagtttacgtgtataaaagaaaggattatgcatcagcaaattgttcacatcagtttgaaaaggttcaaatatttgacaaa |
211 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | || ||| ||||| ||||||||||||||||||||||||| | |
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| T |
44203177 |
caatttagctttatatctcctagtttaagtgtataaaagaaaggattatgcatcaactattttttcgcatcattttgaaaaggttcaaatatttgacata |
44203078 |
T |
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| Q |
212 |
gtacttaagagtttaccaataaagtaattgtctctgct |
249 |
Q |
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||| || ||||||||| |||||| ||||||||| |||| |
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| T |
44203077 |
gtaatt-agagtttactaataaattaattgtctttgct |
44203041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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