View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_56 (Length: 255)
Name: NF9349_low_56
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_56 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 5034125 - 5033893
Alignment:
| Q |
15 |
tggtgttatgaagagtattgttgacagtggctctgcctataaagctgatgcgatacgaacggcttttgtttttacatcagtgaagtagcaaacgagctaa |
114 |
Q |
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| T |
5034125 |
tggtgttatgaagagtattgttgacagtgactctgcctataaagctgatgcgatacgaacggcttttgtttttacatcagtgaagtagcaaactagctaa |
5034026 |
T |
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| Q |
115 |
aggagtgtttggctgcagaattatcccgaaaaagggctggtcgggtagatcatttccatacacataatttctgtcttccctttacttacatgctacaact |
214 |
Q |
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| T |
5034025 |
aggagtatttggctgcagaattatcccgaaaaagggctggtcgggtagatcatttccatacacataatttctgtcttccctttacttacaagctacaact |
5033926 |
T |
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| Q |
215 |
ccaagtctccaagtcacagccatcttaatgttgaaataagc |
255 |
Q |
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| T |
5033925 |
cca--------agtcacagccatcttaatgttgaaataagc |
5033893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 4974720 - 4974768
Alignment:
| Q |
105 |
aacgagctaaaggagtgtttggctgcagaattatcccgaaaaagggctg |
153 |
Q |
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| T |
4974720 |
aacgagctaaaggagtgtttggctgcagaattagcccgaaaaggggctg |
4974768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 4999673 - 4999720
Alignment:
| Q |
110 |
gctaaaggagtgtttggctgcagaattatcccgaaaaagggctggtcg |
157 |
Q |
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| T |
4999673 |
gctaaaggagtgtttggctgaagaattagcccgaaaaaaggttggtcg |
4999720 |
T |
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