View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_60 (Length: 250)
Name: NF9349_low_60
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 24041403 - 24041172
Alignment:
| Q |
1 |
cgagtttgagcgcgtatacctcccttgagtgatgaggagcaacatgacatatggagggatgtgaatcttcatcccataaggttaactatcgtttatttag |
100 |
Q |
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| T |
24041403 |
cgagtttgagcgcgtatacctcccttgagtgatgaggagcaacatgacatatggagggatgtgaatcttcatcccatgagattaactatcgtttatatag |
24041304 |
T |
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| Q |
101 |
tgcttaggtcataagtagtagtttgaattaaaccaacaaataggttaagagtaaccgaagaatccgtatcaccactaagatcctcaatcacaccatccat |
200 |
Q |
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| T |
24041303 |
tgcttaggtcataagtagtagtttgaattaaaccaacaaataggttgagagtaaccgaagaatcggtatcaccactaagatcctgaatcacaccatccat |
24041204 |
T |
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| Q |
201 |
ttacttttcaacgcaatcaaacaactcttgca |
232 |
Q |
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| T |
24041203 |
ttacttttcaacgcaatcaaacaactcttgca |
24041172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 9804434 - 9804466
Alignment:
| Q |
29 |
gtgatgaggagcaacatgacatatggagggatg |
61 |
Q |
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| T |
9804434 |
gtgatgaggagcaacatgacatatggatggatg |
9804466 |
T |
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