View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_64 (Length: 246)
Name: NF9349_low_64
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_64 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 28053675 - 28053782
Alignment:
| Q |
139 |
attagtagaaactcgaaacgacgacgtatcttcttttgtaatatcatcacttgagaatgtagcagtaacggtaacatctgaagcaaacaaactcgtcgcg |
238 |
Q |
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| T |
28053675 |
attagtagaaactcgaaacgacgacgtatcttcttttgtaatatcatcacttgagaatgtagcagtaacggtaacatctgaagcaaacaaactcgtcgcg |
28053774 |
T |
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| Q |
239 |
taactgct |
246 |
Q |
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|||||||| |
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| T |
28053775 |
taactgct |
28053782 |
T |
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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 28053537 - 28053599
Alignment:
| Q |
1 |
gaaagaaagcctcttcgccaacgctgtttgtagttcatagctttctttacactccttagcgta |
63 |
Q |
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| T |
28053537 |
gaaagaaagcctcttcgccaacgctgtttgtagttcatagctttctttacactccttagcgta |
28053599 |
T |
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