View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_7 (Length: 479)
Name: NF9349_low_7
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 8172420 - 8171968
Alignment:
| Q |
19 |
agggggtcgatgaaacttaccaaatttgcataattaacaaaatgagtattatacaagctagtttaattgggttgaactataatggctatggtacttggcc |
118 |
Q |
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| T |
8172420 |
agggggtcgatgaaacttaccaaatttgcataattaagaaa-tgagtattatacaagctagtttaattgggttgaactataatggctatggtacttggct |
8172322 |
T |
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| Q |
119 |
ttcgatagtgtaaaatgtagtcaattaactcttatttatgataacacaatatagcttttgaatatggtgcataatatttcactttgagtatattttaaga |
218 |
Q |
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| T |
8172321 |
ttcgatagtgtaaaatgtagtcaattaactcttatttatgatagcacaatatagcttttgaatatgcagcataatatttcactttgagtatattttaaga |
8172222 |
T |
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| Q |
219 |
aaataatgtgtgtttgaattaatgttatccacaaaccaaaataccacaaaattcataggccaccaccgaataatgtgaatagaaatctgaaaaataatgc |
318 |
Q |
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| T |
8172221 |
aaataatgtgtgtttgaattaatgttatccacaaaccaaaataccacaaaattcataggccaccaccgaataatgtgaatggaaatctaaaaaataatgc |
8172122 |
T |
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| Q |
319 |
attcttcacatggcttacaatttgcaaattataatatacaaattcaaagaggtgaagtaaagcatttttcatagagatctacaagaagtatatgttggga |
418 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8172121 |
attcctcacatggcttacaatttgcaaattataatatagaaattcaaagaggtgaagtaaagcatttttcatagagatctacaagaagtatatgttggga |
8172022 |
T |
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| Q |
419 |
aataaaccatgtgaatggattagtccgttctgtgtttctttataagaataatct |
472 |
Q |
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| T |
8172021 |
aataaaccatgtgaatggattagtccgttctgtgtttctttataagaataatct |
8171968 |
T |
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