View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9349_low_76 (Length: 239)
Name: NF9349_low_76
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9349_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 32199029 - 32199242
Alignment:
| Q |
11 |
cagagaaaacatcatagttgacaaaattatggtaacattgtgtatagacatagcatggttttattctccccacaactatttatttactcagttatatata |
110 |
Q |
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| T |
32199029 |
cagagaaaacatcatagttgacaaaattatggtaacattgtgtatagacatagcatggttttattgtccccacaactatttatttactcagttatatata |
32199128 |
T |
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| Q |
111 |
tctctaattttgtttaattgcttttaagatatatacaatttccattttgtattagaagcttgtctcttttaatttttgcatgataaatatatataactaa |
210 |
Q |
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| T |
32199129 |
tctctaattttgtttaattgcttttaagatatatacaatttccattttgtattagaagcttgtctcttttaatttttgcatgataaatatatataactaa |
32199228 |
T |
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| Q |
211 |
tcttacattgttag |
224 |
Q |
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|||||||||||||| |
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| T |
32199229 |
tcttacattgttag |
32199242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 32196621 - 32196718
Alignment:
| Q |
13 |
gagaaaacatcatagttgacaaaattatggtaacattgtgta--tagacatagcatggttttattctccccacaactatttatttactcagttatata |
108 |
Q |
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| T |
32196621 |
gagaaaacatcatagttgacaaaattatggtaaaattgtgtaaggatatatagcatggttttattctccccacaactatttatttactcagttatata |
32196718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 32196718 - 32196774
Alignment:
| Q |
167 |
agcttgtctcttttaatttttgcatgataaatatatataactaatcttacattgtta |
223 |
Q |
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| T |
32196718 |
agcttgtctctttaaattattgcatgataaatatatataactaatcttacattgtta |
32196774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 113 - 209
Target Start/End: Complemental strand, 40401847 - 40401751
Alignment:
| Q |
113 |
tctaattttgtttaattgcttttaagatatatacaatttccattttgtattagaagcttgtctcttttaatttttgcatgataaatatatataacta |
209 |
Q |
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|||| |||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| |
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| T |
40401847 |
tctacttttgtttaattgcttttaagacagatacaatttccattttgtattagaagtctgtctctcttaatttttgcatgataaacatatataacta |
40401751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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