View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9349_low_77 (Length: 238)

Name: NF9349_low_77
Description: NF9349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9349_low_77
NF9349_low_77
[»] chr1 (3 HSPs)
chr1 (1-128)||(23552532-23552659)
chr1 (187-223)||(32060573-32060609)
chr1 (191-223)||(35754030-35754062)
[»] chr8 (3 HSPs)
chr8 (187-223)||(7840053-7840089)
chr8 (187-223)||(11676271-11676307)
chr8 (187-223)||(29668752-29668788)
[»] chr6 (3 HSPs)
chr6 (187-223)||(9960-9996)
chr6 (187-223)||(12686-12722)
chr6 (187-223)||(17721-17757)
[»] chr5 (3 HSPs)
chr5 (187-223)||(2315938-2315974)
chr5 (187-223)||(2643687-2643723)
chr5 (187-223)||(11016002-11016038)
[»] chr4 (4 HSPs)
chr4 (187-223)||(28071472-28071508)
chr4 (187-223)||(50063749-50063785)
chr4 (187-221)||(25516846-25516880)
chr4 (187-221)||(25536738-25536772)
[»] chr3 (4 HSPs)
chr3 (187-223)||(2544979-2545015)
chr3 (187-223)||(35127233-35127269)
chr3 (187-223)||(36430005-36430041)
chr3 (187-223)||(46278520-46278556)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 23552659 - 23552532
Alignment:
Q  1 cagaaagattacttcgacgaccagattgacgaaaagaatcattaacaatcggttccagatcaatgtccattggaatcggacctgattcttggttccgcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  23552659 cagaaagattacttcgacgaccagattgacgaaaagaatcattaacaatcggttccagatcaatgtccattggaatcggacctgattcttggttcctcgt 23552560  T
Q  101 agtagcttgagaaaagagagataacaaa 128  Q
     ||||||||||||||||| ||| |||||    
T  23552559 cgtagcttgagaaaagagggattacaaa 23552532  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 32060609 - 32060573
Alignment:
Q  187 accggtaccgggattgcggtcgttacaaaacggtatc 223  Q
    |||||| |||||||||||| |||||||||||||||||    
T  32060609 accggtgccgggattgcggccgttacaaaacggtatc 32060573  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 35754030 - 35754062
Alignment:
Q  191 gtaccgggattgcggtcgttacaaaacggtatc 223  Q
    ||||||||||||||| |||||||||||||||||    
T  35754030 gtaccgggattgcggccgttacaaaacggtatc 35754062  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 7840089 - 7840053
Alignment:
Q  187 accggtaccgggattgcggtcgttacaaaacggtatc 223  Q
    ||||||||||||||||||| |||||||||||||||||    
T  7840089 accggtaccgggattgcggccgttacaaaacggtatc 7840053  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 11676271 - 11676307
Alignment:
Q  187 accggtaccgggattgcggtcgttacaaaacggtatc 223  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  11676271 accggtaccgggattgcggccgttacaaatcggtatc 11676307  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 29668752 - 29668788
Alignment:
Q  187 accggtaccgggattgcggtcgttacaaaacggtatc 223  Q
    |||||||||||||||| || |||||||||||||||||    
T  29668752 accggtaccgggattgtggccgttacaaaacggtatc 29668788  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 9996 - 9960
Alignment:
Q  187 accggtaccgggattgcggtcgttacaaaacggtatc 223  Q
    ||||||||||||||||||| |||||||||||||||||    
T  9996 accggtaccgggattgcggccgttacaaaacggtatc 9960  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 12722 - 12686
Alignment:
Q  187 accggtaccgggattgcggtcgttacaaaacggtatc 223  Q
    ||||||||||||||||||| |||||||||||||||||    
T  12722 accggtaccgggattgcggccgttacaaaacggtatc 12686  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 17757 - 17721
Alignment:
Q  187 accggtaccgggattgcggtcgttacaaaacggtatc 223  Q
    ||||||||||||||||||| |||||||||||||||||    
T  17757 accggtaccgggattgcggccgttacaaaacggtatc 17721  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 2315974 - 2315938
Alignment:
Q  187 accggtaccgggattgcggtcgttacaaaacggtatc 223  Q
    ||||||||||||||||||| |||||||||||||||||    
T  2315974 accggtaccgggattgcggccgttacaaaacggtatc 2315938  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 2643723 - 2643687
Alignment:
Q  187 accggtaccgggattgcggtcgttacaaaacggtatc 223  Q
    ||||||||||||||||||| |||||||||||||||||    
T  2643723 accggtaccgggattgcggccgttacaaaacggtatc 2643687  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 11016002 - 11016038
Alignment:
Q  187 accggtaccgggattgcggtcgttacaaaacggtatc 223  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  11016002 accggtaccggaattgcggacgttacaaaacggtatc 11016038  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 28071508 - 28071472
Alignment:
Q  187 accggtaccgggattgcggtcgttacaaaacggtatc 223  Q
    ||||||||||||||||||| |||||||||||||||||    
T  28071508 accggtaccgggattgcggccgttacaaaacggtatc 28071472  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 50063749 - 50063785
Alignment:
Q  187 accggtaccgggattgcggtcgttacaaaacggtatc 223  Q
    ||||||||||||||||||| |||||||||||||||||    
T  50063749 accggtaccgggattgcggccgttacaaaacggtatc 50063785  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 25516880 - 25516846
Alignment:
Q  187 accggtaccgggattgcggtcgttacaaaacggta 221  Q
    ||||||||||||||||||| |||||||||||||||    
T  25516880 accggtaccgggattgcggccgttacaaaacggta 25516846  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 25536738 - 25536772
Alignment:
Q  187 accggtaccgggattgcggtcgttacaaaacggta 221  Q
    ||||||||||||||||||| |||||||||||||||    
T  25536738 accggtaccgggattgcggccgttacaaaacggta 25536772  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 2544979 - 2545015
Alignment:
Q  187 accggtaccgggattgcggtcgttacaaaacggtatc 223  Q
    ||||||||||||||||||| |||||||||||||||||    
T  2544979 accggtaccgggattgcggccgttacaaaacggtatc 2545015  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 35127269 - 35127233
Alignment:
Q  187 accggtaccgggattgcggtcgttacaaaacggtatc 223  Q
    ||||||||||||||||||| |||||||||||||||||    
T  35127269 accggtaccgggattgcggccgttacaaaacggtatc 35127233  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 36430005 - 36430041
Alignment:
Q  187 accggtaccgggattgcggtcgttacaaaacggtatc 223  Q
    ||||||||||||||||||| |||||||||||||||||    
T  36430005 accggtaccgggattgcggccgttacaaaacggtatc 36430041  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 46278520 - 46278556
Alignment:
Q  187 accggtaccgggattgcggtcgttacaaaacggtatc 223  Q
    ||||||||||||||||||| |||||||||||||||||    
T  46278520 accggtaccgggattgcggccgttacaaaacggtatc 46278556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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